BQ623551

Overview
NameBQ623551
Unique NameBQ623551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623551_ssr267 microsatellite BQ623551_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
BQ623551_ssr286 microsatellite BQ623551_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1628 contig Csv1_Contig1628:82..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 6.373e-19
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VRS++M GL WGASKLVPVGYGIKK+QI   + DD V
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKV 201
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.854e-18
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            VLLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD V
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKV 195
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.854e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD V
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKV 195
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.422e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VR+V+M GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 238
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.163e-18
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE +RS++M GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKV 200
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198
[Close]
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKV 198
The following BLAST results are available for this feature:
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_XENTR6.373e-1975.44Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_DROME1.854e-1875.44Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B2_BOMMO1.854e-1873.68Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1D_XENLA2.422e-1873.68Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_XENLA3.163e-1871.93Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1B_MOUSE7.046e-1871.93Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN7.046e-1871.93Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK7.046e-1871.93Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_BOVIN7.046e-1871.93Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_RABIT9.203e-1871.93Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00642 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623551 ID=BQ623551; Name=BQ623551; organism=Citrus sinensis; type=EST; length=604bp
CACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCTTGATCAGT
ATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGAC
ATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAA
CGCCAGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCCAAGCTTCC
CTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGAC
GCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTT
GGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGA
GGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCA
TCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAA
GCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAG
CATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGCAGATCATG
ATGACAATCATTGATGATCTTGTTCTGTGGATTCACTCATAGAGGACACC
TCAC
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