BQ623551

Overview
NameBQ623551
Unique NameBQ623551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623551_ssr267 microsatellite BQ623551_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
BQ623551_ssr286 microsatellite BQ623551_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1628 contig Csv1_Contig1628:82..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM +LE  VRSV++ GL WGASKLVPVGYGI+K+QI   + DD V
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKV 253          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKV 254          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKV 254          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKV 254          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKV 254          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+K+QI   + DD V
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKV 253          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDL 571
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKK+QI +T+I+DL
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDL 233          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDL 571
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKK+QI +T+I+DL
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQI-ITVIEDL 183          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            V+LD+KPWDDETDM ++E+ VRSV+M GL WGA+KL+P+ YGIKK+ IM  + DD V
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKV 180          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 565
            +LLDVKPWDDETDM +LE+ VRS+EM GL WGASKLV VGYGIKK+ I + + D
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVED 186          
The following BLAST results are available for this feature:
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D_RABIT2.678e-1770.18Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT4.567e-1768.42Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MOUSE4.567e-1768.42Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1D_MACFA4.567e-1768.42Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN4.567e-1768.42Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_BOVIN7.791e-1768.42Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1B2_CAEEL2.267e-1666.07Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL2.267e-1666.07Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_ARTSA5.050e-1663.16Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]
EF1B_DICDI1.125e-1570.37Elongation factor 1-beta OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00642 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623551 ID=BQ623551; Name=BQ623551; organism=Citrus sinensis; type=EST; length=604bp
CACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCTTGATCAGT
ATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGAC
ATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAA
CGCCAGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCCAAGCTTCC
CTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGAC
GCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTT
GGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGA
GGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCA
TCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAA
GCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAG
CATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGCAGATCATG
ATGACAATCATTGATGATCTTGTTCTGTGGATTCACTCATAGAGGACACC
TCAC
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