BQ623590

Overview
NameBQ623590
Unique NameBQ623590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:708..1345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.638e-59
Identity = 121/202 (59.90%), Postives = 133/202 (65.84%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSPL 598
            EGTGVFVD  GAGKHIQAGA KV+ITAP KG DIPTYV+GVN   Y  D   IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRCSDVS+ +
Sbjct:  177 EGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTYVMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTI 378          

HSP 2 Score: 31.187 bits (69), Expect = 4.638e-59
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 1
Query:  592 TVDSSLTLVMGDDMV 636
            T+DSSLT+VMGDDMV
Sbjct:  377 TIDSSLTMVMGDDMV 391          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.232e-57
Identity = 122/202 (60.40%), Postives = 131/202 (64.85%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSPL 598
            EGTGVFVD  GAGKHIQAGAKKV+ITAP KG DIPTYVVGVN   Y  D   IISNASCTTNCLAPFVKVLD++ GI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           K    AE+VN AFR++A   LKG+L VCD PLVSVDFRCSD SS +
Sbjct:  180 EGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTI 381          

HSP 2 Score: 28.4906 bits (62), Expect = 3.232e-57
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  592 TVDSSLTLVMGDDMV 636
            T+DSSLT+VMG DMV
Sbjct:  380 TIDSSLTMVMGGDMV 394          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.690e-53
Identity = 108/199 (54.27%), Postives = 128/199 (64.32%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVFVD  GAGKHIQAGAKKVLITAPGKG+ + T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTPN          SKKTF EEVN A  ++A+  +KGI+   DEPLVS D+R +D S+
Sbjct:  175 EATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDEST 373          

HSP 2 Score: 28.1054 bits (61), Expect = 7.690e-53
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  595 VDSSLTLVMGDDMV 636
            +DSSLT+VMGDDM+
Sbjct:  375 IDSSLTMVMGDDML 388          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 1.309e-52
Identity = 112/199 (56.28%), Postives = 124/199 (62.31%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVFV  EGA KH+QAGAKKVLITAPGKG +I TYVVGVNA  YK +E  +ISNASCTTNCLAPF KV++  FGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           K T AE+VN   +E+A+  LKG+L   D  LVS DFR +D SS
Sbjct:   96 EATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELQGKLNGIALRVPTPNVSVVDLVVQVEKNTIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSS 294          

HSP 2 Score: 29.261 bits (64), Expect = 1.309e-52
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  583 CILTVDSSLTLVMGDDMV 636
            C  TVD SLT+VMG DMV
Sbjct:  292 CSSTVDGSLTMVMGGDMV 309          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.894e-52
Identity = 107/199 (53.77%), Postives = 127/199 (63.82%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVFVD  GAGKHI+AGAKKVLITAPGKGD I T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTPN          +KKTF EEVN A  ++++  +KGI+   DEPLVS D R +D S+
Sbjct:  173 EATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPSLKGKLNGIALRVPTPNVSVCDVVMQVNKKTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDEST 371          

HSP 2 Score: 28.8758 bits (63), Expect = 2.894e-52
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  595 VDSSLTLVMGDDMV 636
            +DSSLT+VMGDDM+
Sbjct:  373 IDSSLTMVMGDDMI 386          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.440e-47
Identity = 102/198 (51.52%), Postives = 120/198 (60.61%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVFV +EGA KHI AGAKKVLITAPGK +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTST                 NG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++ +D SS
Sbjct:   97 EATGVFVSKEGATKHINAGAKKVLITAPGKNEDGTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASS 294          

HSP 2 Score: 25.0238 bits (53), Expect = 7.440e-47
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  595 VDSSLTLVMGDDMV 636
            VD++LTLVMG+D+V
Sbjct:  296 VDANLTLVMGNDLV 309          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.264e-46
Identity = 100/198 (50.51%), Postives = 119/198 (60.10%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF  +EGA KH+ AGAKKVLITAPGK +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTST                 NG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++ +D SS
Sbjct:   97 ESTGVFTSKEGALKHVNAGAKKVLITAPGKNEDGTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASS 294          

HSP 2 Score: 26.1794 bits (56), Expect = 1.264e-46
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1
Query:  595 VDSSLTLVMGDDMV 636
            VD+SLTLVMG+D+V
Sbjct:  296 VDASLTLVMGNDLV 309          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 174.866 bits (442), Expect = 3.143e-43
Identity = 96/204 (47.06%), Postives = 120/204 (58.82%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSPLIHLS 610
            E TG F  RE A KH++AGAKKV+I+AP K +  T V+GVN D Y P    +ISNASCTTNCLAPF KVL ++FGI++G MTT HSYT DQ                  +I+PT+T                 NG+A+RVPTPN           K+   EEVNAA + +A+ ELKGIL+  +EPLVS D+  S VSS +  LS
Sbjct:   95 ESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 298          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.554e-41
Identity = 95/209 (45.45%), Postives = 119/209 (56.94%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSPLIHLSHLSWE 625
            E TG F  R  A KH++AGAKKV+I+AP   +  T V+GVN D Y   +  +ISNASCTTNCLAPF KVL+ KFGI +G MTT HSYT DQ                  NI+PTST                 NG A+RVPTPN          +++  AEEVNAA +E+A+ +LKGIL   +EPLVS D+  +  SS +  LS +  E
Sbjct:   95 ESTGFFTKRADAAKHLEAGAKKVIISAPANEEDITIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVME 303          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.236e-39
Identity = 87/189 (46.03%), Postives = 109/189 (57.67%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 568
            E TGVF +RE A  H+QAGAKKV+ITAP KG+  T V+G N D  KP+  IIS ASCTTN +AP VKVL +KFGI+ G +TT HSYT DQ                  NI+PT+T                 +G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D
Sbjct:   96 ESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSD 284          
The following BLAST results are available for this feature:
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PB_ARATH4.638e-5959.90Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL3.232e-5760.40Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_GRAVE7.690e-5354.27Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY31.309e-5256.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_CHOCR2.894e-5253.77Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_ANASP7.440e-4751.52Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT1.264e-4650.51Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_BACST3.143e-4347.06Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_BACSU6.554e-4145.45Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_THEMA1.236e-3946.03Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00681 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623590 ID=BQ623590; Name=BQ623590; organism=Citrus sinensis; type=EST; length=637bp
TGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTC
AGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGCAAGGGTGACATC
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTA
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