BQ623590

Overview
NameBQ623590
Unique NameBQ623590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:708..1345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.030e-33
Identity = 79/204 (38.73%), Postives = 109/204 (53.43%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSPLIHLS 610
            E TGVF  +E A  H++ GAK+V+I+AP K D P YVVGVN + + P E +ISNASCTTNCLAP  KV++  FGI +G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+          +K T  E++ AA + +++  +KG+L   ++ +VS DF C D  S +   S
Sbjct:   97 ESTGVFTTQETASAHLKGGAKRVIISAPSK-DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDF-CGDNHSSIFDAS 298          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 76/191 (39.79%), Postives = 102/191 (53.40%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TGVF  +E AG H+  GAKKV+I+AP   D P +VVGVN ++Y  D  +ISNASCTTNCLAP  KV+D +FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVP P+           K    E++ AA +++++  LKGIL   ++ +VS DF
Sbjct:   95 ESTGVFTTKEKAGAHLTGGAKKVIISAPS-ADAPMFVVGVNLESYSSDMQVISNASCTTNCLAPLAKVIDDEFGIVEGLMTTVHATTATQKTVDGPSGKDWRAGRGAGANIIPASTGAAKAVGKVIPHLNGKLTGMAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDF 284          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 82/198 (41.41%), Postives = 105/198 (53.03%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   EGA KHI AGAKKV+ITAP K D P +VVGVN + Y  D  I+SNASCTTNCLAP  KV++  FGI  G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K+T  EE+ +  + +++ +LKG+L   ++ +VS DF   + SS
Sbjct:   96 ESTGVFTTLEGAQKHIDAGAKKVVITAPSK-DAPMFVVGVNEEKYTSDLNIVSNASCTTNCLAPLAKVVNDTFGIESGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGLAFRVPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSS 292          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 78/198 (39.39%), Postives = 106/198 (53.54%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF  +E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FGII+G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +++  A +++++NELKGIL   ++ +VS D      SS
Sbjct:   96 ESTGVFTTQEKASAHLKGGAKKVVISAPS-ADAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVPTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSS 292          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 76/191 (39.79%), Postives = 105/191 (54.97%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK +  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K+   E++ AA +E ++ ++KGIL   ++ +VS DF
Sbjct:   99 ESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKSELNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDF 288          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 77/191 (40.31%), Postives = 102/191 (53.40%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TGVF   + A  H+Q GAKKV+I+AP  GD P +V GVN + Y  D  +ISNASCTTNCLAP  KV++  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+           K    EE+ A  +++++NELKGIL   ++ +VS DF
Sbjct:   96 ESTGVFTSIDAASAHLQGGAKKVIISAPS-GDAPMFVCGVNLEKYTSDLKVISNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQKTVDGPSNKDWRGGRGAGANIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDF 285          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 84/201 (41.79%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TG+F     A  H++AGAK+V+I+AP K    IPT+VVGVN   Y  D + I+SNASCTTNCLAP  K+LD  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K T  EE+ AA + +A+ ELKGIL    + +VS+DFR    SS
Sbjct:   94 ESTGLFTTYATAENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNADTDKIVSNASCTTNCLAPIAKILDDNFGIVEGLMTTVHAMTATQPTVDGPSKKDFRGGRGAAQNIIPSSTGAAKAAALVLPQLKGKLTGMAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSS 294          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.121e-32
Identity = 78/191 (40.84%), Postives = 102/191 (53.40%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK +  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K    EE+ A  +  ++ +LKGIL   +E +VS DF
Sbjct:  101 ESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKSNIDIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDF 290          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.121e-32
Identity = 78/204 (38.24%), Postives = 109/204 (53.43%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSPLIHLS 610
            E TGVF  +E A  H++ GAK+V+I+AP K D P +VVGVN + + P E +ISNASCTTNCLAP  KV++  FGI +G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+          +K T  E++ AA + +++  +KG+L   ++ +VS DF C D  S +   S
Sbjct:   97 ESTGVFTTKETASAHLKGGAKRVIISAPSK-DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDF-CGDNHSSIFDAS 298          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.121e-32
Identity = 84/201 (41.79%), Postives = 108/201 (53.73%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE----LKGILSVCDEPLVSVDFRCSDVS 589
            E TGVF   E A +H++ GAKKV+ITAPG G +PTYVVGVN D Y P E +ISNASCTTNCLA   KV++ KFGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPT +           K+T  ++V  A R++AD +     KGI+   +E +VS DF  S+ S
Sbjct:   95 ESTGVFKTEELAKEHLKGGAKKVVITAPGSG-VPTYVVGVNLDKYDPKEVVISNASCTTNCLAVLAKVINDKFGIVEGLMTTVHATTATQKTVDAPAKKDWRSGRSVTNNIIPASTGAAKAVTKAIPDLEGKLTGLAFRVPTLDVSVVDLVVRLEKETSYDDVKKAMRDAADGKHPGIEKGIVDYTEEDVVSTDFVGSNYS 294          
The following BLAST results are available for this feature:
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P1_SCHPO5.030e-3338.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_RHIMI6.570e-3339.79Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PICPA8.580e-3341.41Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_EMENI8.580e-3339.39Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_ATRNU8.580e-3339.79Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3P2_RHIRA8.580e-3340.31Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P1_SYNY38.580e-3341.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3PC_MAGLI1.121e-3240.84Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_SCHPO1.121e-3238.24Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P1_AGABI1.121e-3241.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00681 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623590 ID=BQ623590; Name=BQ623590; organism=Citrus sinensis; type=EST; length=637bp
TGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTC
AGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGCAAGGGTGACATC
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTA
back to top