BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:76..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RHOPH (Cytochrome c2 OS=Rhodospirillum photometricum PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.798e-11
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 2 
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAV---NWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYL 334
            CH + KG   K GP L G+FGR +GT  GYSYS     M      W++  L  YLL+PK Y+          +KM+F  L+K  D A++IAYL
Sbjct:   18 CHDLNKGGPIKVGPPLFGVFGRTTGTFAGYSYSPGYTVMGQKGHTWDDNALKAYLLDPKGYVQAKSGDPKANSKMIF-RLEKDDDVANVIAYL 109

HSP 2 Score: 23.0978 bits (48), Expect = 8.798e-11
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCAS 87
            G+A  GEKI K KC +
Sbjct:    2 GDAAVGEKIAKAKCTA 17
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYC2_RHOPH8.798e-1141.94Cytochrome c2 OS=Rhodospirillum photometricum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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