BQ623592 | Citrus Genome Database

Overview


Name	BQ623592
Unique Name	BQ623592
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	588

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig8865	contig	Csv1_Contig8865:76..662.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_TRACR (Cytochrome c OS=Trachypithecus cristatus GN=CYCS PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.041e-31
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPN +GLFGR++G  PGYSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNHHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_APIME (Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.255e-31
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHT+E G  HK GPNL G++GR++G  PGYSY+ ANK   + W ++TL++YL NPKKYIPGTKMVF GLKKPQ+RADLIAY++Q++
Sbjct:   21 QCHTIESGGKHKVGPNLYGVYGRKTGQAPGYSYTDANKGKGITWNKETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAYIEQAS 107

HSP 2 Score: 23.483 bits (49), Expect = 5.255e-31
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1

Query:   34 PPGNAKAGEKIFKTKCA 84
            P G+ + G+KIF  KCA
Sbjct:    4 PAGDPEKGKKIFVQKCA 20

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.255e-31
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLKQ+T+
Sbjct:   17 QCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104

HSP 2 Score: 25.0238 bits (53), Expect = 5.255e-31
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+A+AG+KIF  KCA
Sbjct:    2 GDAEAGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CANFA (Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 6.844e-31
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 6.844e-31
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_SAMCY (Cytochrome c OS=Samia cynthia PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 6.844e-31
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+G +GR++G  PG+SYS ANK   + W + TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK+ST
Sbjct:   21 QCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEST 107

HSP 2 Score: 25.7942 bits (55), Expect = 6.844e-31
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1

Query:   34 PPGNAKAGEKIFKTKCA 84
            P GNA+ G+KIF  +CA
Sbjct:    4 PAGNAENGKKIFVQRCA 20

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_MINSC (Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.914e-31
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEATLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 8.914e-31
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_EQUBU (Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.914e-31
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 8.914e-31
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_EQUAS (Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.914e-31
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 8.914e-31
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_COLLI (Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.155e-30
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLKQ+TA
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKQATA 104

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_ALLMI (Cytochrome c OS=Alligator mississippiensis PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.161e-30
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+GL GR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLIGRKTGQAPGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKPERADLIAYLKEATS 104

HSP 2 Score: 21.557 bits (44), Expect = 1.161e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

The following BLAST results are available for this feature:

BLAST of BQ623592 vs. ExPASy Swiss-Prot

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171


Match Name	E-value	Identity	Description
CYC_TRACR	3.041e-31	68.97	Cytochrome c OS=Trachypithecus cristatus GN=CYCS P...	[more]
CYC_APIME	5.255e-31	64.37	Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2	[more]
CYC2_MOUSE	5.255e-31	67.05	Cytochrome c, testis-specific OS=Mus musculus GN=C...	[more]
CYC_CANFA	6.844e-31	67.82	Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2	[more]
CYC_SAMCY	6.844e-31	66.67	Cytochrome c OS=Samia cynthia PE=1 SV=2	[more]
CYC_MINSC	8.914e-31	67.82	Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE...	[more]
CYC_EQUBU	8.914e-31	66.67	Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2	[more]
CYC_EQUAS	8.914e-31	66.67	Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2	[more]
CYC_COLLI	1.155e-30	68.18	Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2	[more]
CYC_ALLMI	1.161e-30	65.91	Cytochrome c OS=Alligator mississippiensis PE=1 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA