BQ623592 | Citrus Genome Database

Overview


Name	BQ623592
Unique Name	BQ623592
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	588

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig8865	contig	Csv1_Contig8865:76..662.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_MANSE (Cytochrome c OS=Manduca sexta PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.512e-30
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+G FGR++G  PG+SYS ANK   + W E TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLKQ+T
Sbjct:   21 QCHTVEAGGKHKIGPNLHGFFGRKTGQAPGFSYSDANKAKGITWNEDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 107

HSP 2 Score: 21.9422 bits (45), Expect = 1.512e-30
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 1

Query:   34 PPGNAKAGEKIFKTKCA 84
            P G+ + G+K+F  +CA
Sbjct:    4 PAGDVEKGKKLFVQRCA 20

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_MIRLE (Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.969e-30
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKIAT 103

HSP 2 Score: 21.557 bits (44), Expect = 1.969e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_HORSE (Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.969e-30
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG++Y+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 1.969e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_SARPE (Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.969e-30
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   21 QCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107

HSP 2 Score: 22.7126 bits (47), Expect = 1.969e-30
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1

Query:   34 PPGNAKAGEKIFKTKCA 84
            P G+ + G+KIF  +CA
Sbjct:    4 PAGDVEKGKKIFVQRCA 20

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.969e-30
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct:   17 QCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWTEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104

HSP 2 Score: 24.6386 bits (52), Expect = 1.969e-30
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+A+AG+KIF  KCA
Sbjct:    2 GDAEAGKKIFIQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_DRONO (Cytochrome c OS=Dromaius novae-hollandiae GN=CYC PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.971e-30
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNLNGLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   17 QCHTVEKGGKHKTGPNLNGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.564e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 2.564e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.564e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 2.564e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.564e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNLNG+FGR++G  PG++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 2.564e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

[Close]

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_BOVIN (Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.564e-30
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 2

Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103

HSP 2 Score: 21.557 bits (44), Expect = 2.564e-30
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1

Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16

The following BLAST results are available for this feature:

BLAST of BQ623592 vs. ExPASy Swiss-Prot

BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171


Match Name	E-value	Identity	Description
CYC_MANSE	1.512e-30	68.97	Cytochrome c OS=Manduca sexta PE=1 SV=2	[more]
CYC_MIRLE	1.969e-30	67.82	Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2	[more]
CYC_HORSE	1.969e-30	65.52	Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2	[more]
CYC_SARPE	1.969e-30	65.52	Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2	[more]
CYC2_RAT	1.969e-30	65.91	Cytochrome c, testis-specific OS=Rattus norvegicus...	[more]
CYC_DRONO	1.971e-30	67.05	Cytochrome c OS=Dromaius novae-hollandiae GN=CYC P...	[more]
CYC_SHEEP	2.564e-30	66.67	Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2	[more]
CYC_PIG	2.564e-30	66.67	Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2	[more]
CYC_MACGI	2.564e-30	66.67	Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV...	[more]
CYC_BOVIN	2.564e-30	66.67	Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA