BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:76..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 2.121e-29
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +RADLIAYLK+ST+
Sbjct:   17 QCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTS 104

HSP 2 Score: 21.557 bits (44), Expect = 2.121e-29
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+KIF  KCA
Sbjct:    2 GDVEKGKKIFVQKCA 16
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_HAEIR (Cytochrome c OS=Haematobia irritans PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.121e-29
Identity = 55/87 (63.22%), Postives = 69/87 (79.31%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+GLFGR++G   G++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   21 QCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107

HSP 2 Score: 22.7126 bits (47), Expect = 2.121e-29
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1 
Query:   34 PPGNAKAGEKIFKTKCA 84
            P G+ + G+KIF  +CA
Sbjct:    4 PAGDVEKGKKIFVQRCA 20
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_MELGA (Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +T+
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CHICK (Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +T+
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERVDLIAYLKDATS 104
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_ATESP (Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.179e-29
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVEKG  HK GPNL+GLFGR++G   G++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:   17 QCHTVEKGGKHKTGPNLHGLFGRKTGQASGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CROVV (Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.596e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2 
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:   18 CHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104

HSP 2 Score: 21.1718 bits (43), Expect = 3.596e-29
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCAS 87
            G+ + G+KIF  KC +
Sbjct:    2 GDVEKGKKIFSMKCGT 17
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CROAT (Cytochrome c OS=Crotalus atrox PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.596e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2 
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:   18 CHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104

HSP 2 Score: 21.1718 bits (43), Expect = 3.596e-29
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCAS 87
            G+ + G+KIF  KC +
Sbjct:    2 GDVEKGKKIFSMKCGT 17
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CROAD (Cytochrome c OS=Crotalus adamanteus PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.596e-29
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2 
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CHTVE+G  HK GPNL+GLFGR++G   GYSY+AANKN  + W + TL +YL NPKKYIPGTKMVF GLK  ++R DLIAYLK++TA
Sbjct:   18 CHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104

HSP 2 Score: 21.1718 bits (43), Expect = 3.596e-29
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCAS 87
            G+ + G+KIF  KC +
Sbjct:    2 GDVEKGKKIFSMKCGT 17
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC1A_XENLA (Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-A PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 3.596e-29
Identity = 57/88 (64.77%), Postives = 70/88 (79.55%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:   17 QCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104

HSP 2 Score: 22.7126 bits (47), Expect = 3.596e-29
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCA 84
            G+A+ G+KIF  KCA
Sbjct:    2 GDAEKGKKIFIQKCA 16
[Close]
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CYPCA (Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 6.098e-29
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 2 
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVE G  HK GPNL GLFGR++G  PG+SY+ ANK+  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   17 QCHTVENGGKHKVGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWBEZTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104

HSP 2 Score: 21.1718 bits (43), Expect = 6.098e-29
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1 
Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+K+F  KCA
Sbjct:    2 GDVEKGKKVFVQKCA 16
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYC1_XENTR2.121e-2965.91Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]
CYC_HAEIR2.121e-2963.22Cytochrome c OS=Haematobia irritans PE=1 SV=2[more]
CYC_MELGA2.179e-2964.77Cytochrome c OS=Meleagris gallopavo GN=CYC PE=1 SV... [more]
CYC_CHICK2.179e-2964.77Cytochrome c OS=Gallus gallus GN=CYC PE=1 SV=2[more]
CYC_ATESP2.179e-2965.52Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3[more]
CYC_CROVV3.596e-2966.67Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2[more]
CYC_CROAT3.596e-2966.67Cytochrome c OS=Crotalus atrox PE=1 SV=2[more]
CYC_CROAD3.596e-2966.67Cytochrome c OS=Crotalus adamanteus PE=1 SV=2[more]
CYC1A_XENLA3.596e-2964.77Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-... [more]
CYC_CYPCA6.098e-2964.77Cytochrome c iso-1/iso-2 OS=Cyprinus carpio GN=cyc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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