BQ623594

Overview
NameBQ623594
Unique NameBQ623594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2221 contig Csv1_Contig2221:826..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDM--AARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWA-----TPKLSEDKVRQCVDARL 347
            I+HRDIKSSNVL+  +  A + DF L+             +T   G++GY APEYA + +   KSDVYS G+VL+E++TG+ P +      +  +V W      TP  SE +  + +D+ L
Sbjct: 1075 IVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNYDTNTESNTMFAGSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTEAMFDE-ETDMVRWVETVLDTPPGSEAR-EKLIDSEL 1193          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: PKNB_BIFLO (Probable serine/threonine-protein kinase pknB OS=Bifidobacterium longum GN=pknB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARL-HSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPV--DHTLPRGQQSLVTWATP 302
            IIHRDIK  N++I +  V K+ DF ++    D AA +  S  V+GT  Y +PE A    ++ +SD+YS G VL E+LTGR P   D  +    Q +   ATP
Sbjct:  142 IIHRDIKPGNIMISEQGVVKVMDFGIARALDDSAATMTQSQGVVGTAQYLSPEQARGETVDMRSDLYSAGCVLYEMLTGRPPFTGDSAVAIAYQHVSEVATP 243          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K12_RAT (Mitogen-activated protein kinase kinase kinase 12 OS=Rattus norvegicus GN=Map3k12 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS N+LI  DDV KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  265 IIHRDLKSPNMLITYDDVVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 342          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K12_MOUSE (Mitogen-activated protein kinase kinase kinase 12 OS=Mus musculus GN=Map3k12 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS N+LI  DDV KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  265 IIHRDLKSPNMLITYDDVVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 342          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K12_HUMAN (Mitogen-activated protein kinase kinase kinase 12 OS=Homo sapiens GN=MAP3K12 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS N+LI  DDV KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  232 IIHRDLKSPNMLITYDDVVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 309          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARL--HSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKL 308
            I+HRDIKSSNVL+  +  A + DF L+    +        +T    ++GY APEYA + +   KSDVYS G+VL+E++TG+ P D      +  +V W    L
Sbjct: 1080 IVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTDSVF-GAEMDMVRWVETHL 1181          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: PKNL_MYCTU (Probable serine/threonine-protein kinase pknL OS=Mycobacterium tuberculosis GN=pknL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRV-LGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            ++HRD+K  N+LI DD   K+ADF L       AA + ST V LGT  Y +PE    G  + +SDVYS GV++ ELLTG  P
Sbjct:  138 LVHRDVKPENILISDDGDVKLADFGLVRAVA--AASITSTGVILGTAAYLSPEQVRDGNADPRSDVYSVGVLVYELLTGHTP 217          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: PKNL_MYCBO (Probable serine/threonine-protein kinase pknL OS=Mycobacterium bovis GN=pknL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRV-LGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            ++HRD+K  N+LI DD   K+ADF L       AA + ST V LGT  Y +PE    G  + +SDVYS GV++ ELLTG  P
Sbjct:  138 LVHRDVKPENILISDDGDVKLADFGLVRAVA--AASITSTGVILGTAAYLSPEQVRDGNADPRSDVYSVGVLVYELLTGHTP 217          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: PKNB_MYCLE (Serine/threonine-protein kinase pknB OS=Mycobacterium leprae GN=pknB PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.891e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+K +N++I   +  K+ DF ++    D  +   +  V+GT  Y +PE A    ++A+SDVYS G VL E+LTG  P
Sbjct:  134 IIHRDVKPANIMISATNAVKVMDFGIARAIADSTSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEILTGEPP 214          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: Y5005_ARATH (Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRK-----PVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARL 347
            I+H D+K  N+L+ ++  A + DF LS       +R+  T + GT GY APE+ +   ++ KSDVYS+G+VLLE++ GR+      V  T  +  +        K+ E K+ + VD RL
Sbjct:  232 ILHLDVKPENILLDENFRAVVTDFGLSKLIARDESRV-LTDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKKKLEYFPRIVNQKMRERKIMEIVDQRL 349          
The following BLAST results are available for this feature:
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
GSO2_ARATH3.093e-1237.19LRR receptor-like serine/threonine-protein kinase ... [more]
PKNB_BIFLO4.040e-1241.18Probable serine/threonine-protein kinase pknB OS=B... [more]
M3K12_RAT5.277e-1246.91Mitogen-activated protein kinase kinase kinase 12 ... [more]
M3K12_MOUSE5.277e-1246.91Mitogen-activated protein kinase kinase kinase 12 ... [more]
M3K12_HUMAN5.277e-1246.91Mitogen-activated protein kinase kinase kinase 12 ... [more]
GSO1_ARATH5.277e-1238.83LRR receptor-like serine/threonine-protein kinase ... [more]
PKNL_MYCTU6.891e-1247.56Probable serine/threonine-protein kinase pknL OS=M... [more]
PKNL_MYCBO6.891e-1247.56Probable serine/threonine-protein kinase pknL OS=M... [more]
PKNB_MYCLE6.891e-1240.74Serine/threonine-protein kinase pknB OS=Mycobacter... [more]
Y5005_ARATH9.001e-1235.29Probable receptor-like protein kinase At5g20050 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00685 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00685 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623594 ID=BQ623594; Name=BQ623594; organism=Citrus sinensis; type=EST; length=427bp
CTCATATTATCCATCGCGATATTAAGTCCAGCAATGTACTAATTTTTGAT
GATGATGTAGCAAAGATTGCCGACTTTGATTTATCTAATCAAGCTCCTGA
TATGGCAGCTCGCCTTCATTCTACTCGTGTTCTTGGAACTTTTGGTTATC
ATGCTCCTGAGTATGCAATGACTGGACAGTTGAATGCAAAGAGTGATGTA
TACAGCTTTGGTGTTGTTCTGCTTGAGCTTCTGACAGGTCGAAAACCTGT
CGATCATACACTACCACGTGGACAGCAGAGTCTAGTGACATGGGCCACAC
CGAAACTTAGTGAAGATAAGGTTAGGCAATGCGTTGATGCAAGACTAGGA
GGAGATTATCCTCCCAAGGCAGTTGCAAAGATGGCTGCAGTTGCTGCTCT
GTGTGTTCAGTATGAAGCTGATTTCCG
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