BQ623594

Overview
NameBQ623594
Unique NameBQ623594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2221 contig Csv1_Contig2221:826..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDL----SNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARL 347
            ++H +IK+SN+L+  +    ++D+ L    SN +P               GYHAPE   T ++  KSDVYSFGV+LLELLTG+ P   +L      L  W    + E+   +  D  L
Sbjct:  471 LVHGNIKASNILLHPNQDTCVSDYGLNQLFSNSSPPNRLA----------GYHAPEVLETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVLSVVREEWTAEVFDVEL 578          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 3
Query:   12 HRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARL 347
            H ++KSSN+L+ +   A+++DF L+           ST      GY APE     +++ K+DVYSFGVVLLELLTG+ P +  +      L  W      E+   +  D+ L
Sbjct:  488 HGNVKSSNILLTNSHDARVSDFGLAQ-----LVSASSTTPNRATGYRAPEVTDPRRVSQKADVYSFGVVLLELLTGKAPSNSVMNEEGMDLARWVHSVAREEWRNEVFDSEL 594          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K13_MOUSE (Mitogen-activated protein kinase kinase kinase 13 OS=Mus musculus GN=Map3k13 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS NVL+   D  KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  274 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 351          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K13_HUMAN (Mitogen-activated protein kinase kinase kinase 13 OS=Homo sapiens GN=MAP3K13 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS NVL+   D  KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  275 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 352          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K13_BOVIN (Mitogen-activated protein kinase kinase kinase 13 OS=Bos taurus GN=MAP3K13 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS NVL+   D  KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  275 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 352          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M3K13_PONAB (Mitogen-activated protein kinase kinase kinase 13 OS=Pongo abelii GN=MAP3K13 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS NVL+   D  KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGVVL ELLTG  P
Sbjct:  275 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKM---SFAGTVAWLAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIP 352          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.834e-11
Identity = 39/112 (34.82%), Postives = 57/112 (50.89%), Query Frame = 3
Query:   12 HRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARL 347
            H +IKSSN+L+     AK++DF L+      A   +        GY APE     +++ K DVYSFGVVLLEL+TG+ P +  +      L  W      ++  R+  D+ L
Sbjct:  494 HGNIKSSNILLTKSHDAKVSDFGLAQLVGSSATNPNRAT-----GYRAPEVTDPKRVSQKGDVYSFGVVLLELITGKAPSNSVMNEEGVDLPRWVKSVARDEWRREVFDSEL 600          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: M313A_XENLA (Mitogen-activated protein kinase kinase kinase 13-A OS=Xenopus laevis GN=map3k13-A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.619e-11
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+KS NVL+   D  KI+DF  S +  D + ++      GT  + APE      ++ K D++SFGV+L ELLTG  P
Sbjct:  276 IIHRDLKSPNVLVTHTDTVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPVSEKVDIWSFGVLLWELLTGEIP 353          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQA--PDMAAR--LHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPV 251
            IIHRD+K  N+L+  + V+K+ D  LS      D+++R     T  +GT  Y  PEY  TG ++ KSDVYS GVV+L+L+T +  +
Sbjct:  608 IIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAI 693          
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Match: PKNB_MYCTU (Serine/threonine-protein kinase pknB OS=Mycobacterium tuberculosis GN=pknB PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 3
Query:    6 IIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTR-VLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 248
            IIHRD+K +N++I   +  K+ DF ++    D    +  T  V+GT  Y +PE A    ++A+SDVYS G VL E+LTG  P
Sbjct:  134 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 215          
The following BLAST results are available for this feature:
BLAST of BQ623594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
Y2267_ARATH3.420e-1134.75Probable inactive receptor kinase At2g26730 OS=Ara... [more]
RLK90_ARATH3.420e-1134.82Probable inactive receptor kinase RLK902 OS=Arabid... [more]
M3K13_MOUSE3.420e-1144.44Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_HUMAN3.420e-1144.44Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_BOVIN3.420e-1144.44Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_PONAB4.467e-1144.44Mitogen-activated protein kinase kinase kinase 13 ... [more]
Y1848_ARATH5.834e-1134.82Probable inactive receptor kinase At1g48480 OS=Ara... [more]
M313A_XENLA7.619e-1143.21Mitogen-activated protein kinase kinase kinase 13-... [more]
PUB52_ARATH9.951e-1141.86U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PKNB_MYCTU9.951e-1141.46Serine/threonine-protein kinase pknB OS=Mycobacter... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00685 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00685 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623594 ID=BQ623594; Name=BQ623594; organism=Citrus sinensis; type=EST; length=427bp
CTCATATTATCCATCGCGATATTAAGTCCAGCAATGTACTAATTTTTGAT
GATGATGTAGCAAAGATTGCCGACTTTGATTTATCTAATCAAGCTCCTGA
TATGGCAGCTCGCCTTCATTCTACTCGTGTTCTTGGAACTTTTGGTTATC
ATGCTCCTGAGTATGCAATGACTGGACAGTTGAATGCAAAGAGTGATGTA
TACAGCTTTGGTGTTGTTCTGCTTGAGCTTCTGACAGGTCGAAAACCTGT
CGATCATACACTACCACGTGGACAGCAGAGTCTAGTGACATGGGCCACAC
CGAAACTTAGTGAAGATAAGGTTAGGCAATGCGTTGATGCAAGACTAGGA
GGAGATTATCCTCCCAAGGCAGTTGCAAAGATGGCTGCAGTTGCTGCTCT
GTGTGTTCAGTATGAAGCTGATTTCCG
back to top