BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.970e-76
Identity = 116/154 (75.32%), Postives = 135/154 (87.66%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RNRVFH+FR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI+ IP  ID+++Y
Sbjct:  253 VEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIQAIPATIDKSLY 406          

HSP 2 Score: 60.077 bits (144), Expect = 2.970e-76
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLMDELTLKGITQYYAFVEE+QK+H
Sbjct:  231 KPYEINLMDELTLKGITQYYAFVEEKQKLH 260          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.970e-76
Identity = 115/154 (74.68%), Postives = 134/154 (87.01%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFH+FR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI  IP  ID+++Y
Sbjct:  248 VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAQIDKSLY 401          

HSP 2 Score: 61.2326 bits (147), Expect = 2.970e-76
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLMDELTLKGITQYYAFVEERQK+H
Sbjct:  226 KPYEINLMDELTLKGITQYYAFVEERQKLH 255          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 6.587e-76
Identity = 116/154 (75.32%), Postives = 134/154 (87.01%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFHDFR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI  IP  ID+++Y
Sbjct:  250 VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLY 403          

HSP 2 Score: 59.6918 bits (143), Expect = 6.587e-76
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLM+ELTLKGITQYYAFVEERQK+H
Sbjct:  228 KPYEINLMEELTLKGITQYYAFVEERQKLH 257          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.120e-75
Identity = 117/154 (75.97%), Postives = 137/154 (88.96%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSC+Y HAKM Q  RN+VFH+FR G  RNLVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NL+++ DR++LY+IEQELGTEIK IP  ID+++Y
Sbjct:  249 VEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQELGTEIKPIPATIDKSLY 402          

HSP 2 Score: 56.9954 bits (136), Expect = 1.120e-75
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLMDELTLKGI+Q+YAFVEE+QK+H
Sbjct:  227 KPYEINLMDELTLKGISQFYAFVEEKQKLH 256          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 1.461e-75
Identity = 115/154 (74.68%), Postives = 134/154 (87.01%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFH+FR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI  IP  ID+++Y
Sbjct:  265 VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLY 418          

HSP 2 Score: 59.6918 bits (143), Expect = 1.461e-75
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLM+ELTLKGITQYYAFVEERQK+H
Sbjct:  243 KPYEINLMEELTLKGITQYYAFVEERQKLH 272          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 1.461e-75
Identity = 115/154 (74.68%), Postives = 134/154 (87.01%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKIT+LGYSC+Y HA+M Q  RN+VFH+FR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI  IP  ID+++Y
Sbjct:  265 VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLY 418          

HSP 2 Score: 59.6918 bits (143), Expect = 1.461e-75
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLM+ELTLKGITQYYAFVEERQK+H
Sbjct:  243 KPYEINLMEELTLKGITQYYAFVEERQKLH 272          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.463e-75
Identity = 117/154 (75.97%), Postives = 134/154 (87.01%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLF KLQINQSIIFCNS  RVELLAKKITE+GYSC+YIH+KM Q+HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP+N+ETYLHR+GRSGRFGHLG+A+NLITYEDR  L RIEQEL T I+ IP  +D  +Y
Sbjct:  262 VQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLY 415          

HSP 2 Score: 55.4546 bits (132), Expect = 1.463e-75
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    4 KPYVINLMDELTLKGITQYYAFVEERQKVH 93
            KPY INLM+ELTL G+TQYYAFV+E+QKVH
Sbjct:  240 KPYEINLMEELTLLGVTQYYAFVQEKQKVH 269          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.864e-73
Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKITELG+SC+Y HA+M Q  RN+VFH+FR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQEL TEI  IP  ID+++Y
Sbjct:  255 VEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELNTEIAPIPSQIDKSLY 408          

HSP 2 Score: 53.5286 bits (127), Expect = 3.864e-73
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKVH 93
            + P+ INLMDELTLKGI+Q+YAFVEE+QK+H
Sbjct:  232 KNPHEINLMDELTLKGISQFYAFVEEKQKLH 262          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.442e-72
Identity = 129/166 (77.71%), Postives = 145/166 (87.35%), Query Frame = 2
Query:   35 LLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L  R +      +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  254 LTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.442e-72
Identity = 129/166 (77.71%), Postives = 145/166 (87.35%), Query Frame = 2
Query:   35 LLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L  R +      +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSCFY HA+MLQ HRNRVFHDFRNG CRNLVC+DL TRGIDIQAVNVVINFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  254 LTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_VANPO2.970e-7675.32ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_ASHGO2.970e-7674.68ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
DHH1_CANGA6.587e-7675.32ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_CANAL1.120e-7575.97ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_YEAST1.461e-7574.68ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS71.461e-7574.68ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
CGH1_CAEEL1.463e-7575.97ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
DHH1_KLULA3.864e-7374.03ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DHH1_ASPNC5.442e-7277.71ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_ASPCL5.442e-7277.71ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
back to top