BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 6.444e-65
Identity = 119/166 (71.69%), Postives = 139/166 (83.73%), Query Frame = 2
Query:   35 LLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L  R +      +++ +K  CLNTLFSKLQINQSIIFCNS NRVELLAKKITELGYSC+Y HAKM Q  RN+VFH+FR G  RNLVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NL+++ DR++LY+IEQELGTEIK IP  ID+ +Y
Sbjct:  237 LTLRGITQYYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKIEQELGTEIKPIPATIDRKLY 402          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.198e-64
Identity = 118/166 (71.08%), Postives = 139/166 (83.73%), Query Frame = 2
Query:   35 LLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L  R +      +++ +K  CLNTLFSKLQINQ+IIFCNS NRVELLAKKITELGYSC+Y HAKM Q  RN+VFH+FR G  R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+NL+++ DR+NLY+IEQELGTEIK IP  ID+++Y
Sbjct:  237 LTLRGISQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTEIKPIPATIDKSLY 402          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.137e-61
Identity = 114/166 (68.67%), Postives = 136/166 (81.93%), Query Frame = 2
Query:   35 LLSRELPNTMLLLKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 532
            L  R +      +++ +K  CLNTLFSKL+INQ+IIFCNS NRVELLAKKITELGYSC+Y HAKM Q  RN+VFH+FR G+ R LVC+DL TRGIDIQAVNVVINFDFPK +ETYLHR+GRSGRFGHLGLA+N I ++DR +L+ IE ELGTEIK IP  ID+++Y
Sbjct:  236 LTLRGISQFYAFVEEKQKLHCLNTLFSKLKINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIETELGTEIKPIPSDIDRSLY 401          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: DHH1_ENCCU (ATP-dependent RNA helicase DHH1 OS=Encephalitozoon cuniculi GN=DHH1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.825e-41
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2
Query:   71 LKKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI 505
            +K   K  CL +L  +L INQ +IFCNS+  VELLA KITE+G   ++IH+KM Q+ RN VFH+F  G C+ LV TDL TRG+D    N VINFD  K+ E+YLHR+GR+GRFG  G+A++L+T E++  L  IE +LG EI  +
Sbjct:  327 VKPSEKLLCLKSLLLRLSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGKEISPL 471          

HSP 2 Score: 29.6462 bits (65), Expect = 6.825e-41
Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 1
Query:    1 QKPYVINLMDELTLKGITQYYAFVEERQKV 90
            + P  INLM EL   G+ Q+Y +V+  +K+
Sbjct:  304 KNPLCINLMKELAPVGVKQFYTYVKPSEKL 333          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.598e-33
Identity = 59/144 (40.97%), Postives = 96/144 (66.67%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL+ L+  + + Q++IFCN+  +VE L +K+TE  ++   I++ + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED   +  IE+   T+I+++P  +
Sbjct:  248 KFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEKFYSTQIEELPADV 391          

HSP 2 Score: 29.261 bits (64), Expect = 2.598e-33
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VEE Q
Sbjct:  228 DELTLEGIKQFYINVEEEQ 246          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.475e-33
Identity = 66/152 (43.42%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  L I Q++IFCNS  +V+ L +K+ E  ++   +H +M Q  R+ +  DFR G  R L+CTD++ RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T ED   L  IEQ   T I ++P +I   +
Sbjct:  243 KEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394          

HSP 2 Score: 26.1794 bits (56), Expect = 7.475e-33
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+G+ QY+  VE+ +
Sbjct:  227 DELTLEGLKQYFIAVEKEE 245          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.735e-33
Identity = 56/146 (38.36%), Postives = 95/146 (65.07%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            K  CL  L+  + + Q++IFCN+  +VE L +++ E  ++   I++ + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  +E+   T+I+++P  I +
Sbjct:  248 KYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTNKDIGAMRELERFYSTQIEELPSSISE 393          

HSP 2 Score: 30.8018 bits (68), Expect = 9.735e-33
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI QYY  VEE Q
Sbjct:  228 DELTLEGIGQYYVNVEEEQ 246          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.150e-32
Identity = 60/146 (41.10%), Postives = 96/146 (65.75%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            K  CL  L+  + + Q++IFCN+ ++VE L  K+    ++   IHA + Q  R+ + ++FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED   +  IE+   T+I+++P +I +
Sbjct:  248 KFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEKFYSTQIEEMPANIGE 393          

HSP 2 Score: 26.1794 bits (56), Expect = 2.150e-32
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  228 DELTLEGIKQFYINVEQ 244          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.150e-32
Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+  +VE L +++T   ++   I++ + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N I  ED   L  +EQ   T+I+++P  I
Sbjct:  248 KYDCLTDLYDSISVTQAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVNEDVQALRELEQFYSTQIEELPSDI 391          

HSP 2 Score: 29.6462 bits (65), Expect = 2.150e-32
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VEE Q
Sbjct:  228 DELTLEGIKQFYVNVEEEQ 246          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.646e-32
Identity = 64/150 (42.67%), Postives = 99/150 (66.00%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            K+  K   L  L+  L I Q +IFCN+  +V+ L++K+T+  +S   +H  M Q+ R++V +DFR+G  R L+ TD++ RGID+Q +++VIN+D P N E Y+HR+GRSGRFG  G+A+N IT E+R  L  IE     +IK  P ++++
Sbjct:  247 KEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEE 396          

HSP 2 Score: 21.9422 bits (45), Expect = 3.646e-32
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DE++L  I QYY  VE+ +
Sbjct:  231 DEISLDVIKQYYVDVEKEE 249          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_PICST6.444e-6571.69ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_DEBHA3.198e-6471.08ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_PICGU1.137e-6168.67ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_ENCCU6.825e-4152.41ATP-dependent RNA helicase DHH1 OS=Encephalitozoon... [more]
IF4A_VANPO2.598e-3340.97ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_SCHPO7.475e-3343.42ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
IF4A_KLULA9.735e-3338.36ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_PICGU2.150e-3241.10ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_CANGA2.150e-3240.97ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
FAL1_KLULA3.646e-3242.67ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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