BQ623598

Overview
NameBQ623598
Unique NameBQ623598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10924 contig Csv1_Contig10924:235..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.185e-32
Identity = 58/144 (40.28%), Postives = 97/144 (67.36%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL+ L+  + + Q++IFCN+  +VE L K++T+  ++   I++ + Q  R+ +  +FR G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+NL+T  D  ++  +E+   T+I+++P +I
Sbjct:  248 KYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGDMRELERFYSTQIEELPANI 391          

HSP 2 Score: 25.409 bits (54), Expect = 6.185e-32
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            D LTL+GI QYY  VE  +
Sbjct:  228 DALTLEGIQQYYINVESEE 246          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.366e-31
Identity = 61/148 (41.22%), Postives = 95/148 (64.19%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K  CL  L++ + + Q++IFCN+  +V+ L +K+TE  ++   +H  M Q  R+ +  +FR+G+ R L+ TD+  RGID+Q V++VIN+D P N E Y+HR+GRSGRFG  G+A+N +T  D   L  IE    T+I+++P  I   I
Sbjct:  255 KFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADLI 402          

HSP 2 Score: 24.6386 bits (52), Expect = 1.366e-31
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  V++
Sbjct:  235 DELTLEGIRQFYINVQK 251          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.366e-31
Identity = 60/144 (41.67%), Postives = 92/144 (63.89%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+ ++VE L  K+    ++   IHA + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T  D   +  IEQ   T+I+++P  I
Sbjct:  249 KFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADI 392          

HSP 2 Score: 25.409 bits (54), Expect = 1.366e-31
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVE 75
            DELTL+GI Q+Y  VE
Sbjct:  229 DELTLEGIKQFYINVE 244          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.778e-31
Identity = 60/144 (41.67%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+ ++VE L  K+ E  ++   IHA + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IE+   T+I ++P  I
Sbjct:  249 KFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLREQKFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEKFYSTQITEMPADI 392          

HSP 2 Score: 25.409 bits (54), Expect = 1.778e-31
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVE 75
            DELTL+GI QY+  VE
Sbjct:  229 DELTLEGIKQYFINVE 244          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.778e-31
Identity = 60/144 (41.67%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+ ++VE L  K+ E  ++   IHA + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T  D   +  IE+   T+I+++P  I
Sbjct:  249 KFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADI 392          

HSP 2 Score: 25.409 bits (54), Expect = 1.778e-31
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVE 75
            DELTL+GI Q+Y  VE
Sbjct:  229 DELTLEGIKQFYINVE 244          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.016e-31
Identity = 59/144 (40.97%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+ ++VE L  K+    ++   IHA + Q  R+ + ++FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T +D   +  IE+   T+I+++P  I
Sbjct:  249 KFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADI 392          

HSP 2 Score: 26.1794 bits (56), Expect = 3.016e-31
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEE 78
            DELTL+GI Q+Y  VE+
Sbjct:  229 DELTLEGIKQFYINVEQ 245          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.927e-31
Identity = 60/150 (40.00%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQ 523
            K+  K   L  ++  L I Q +IFCNS  +V+ LA K+ +  ++   +H  M QD R+RV ++FR G  R L+ TD++ RGID+Q V++VIN+D P+ +E Y+HR+GRSGRFG  G+A+N +T  D   +  IE+    ++K +P  + +
Sbjct:  248 KEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEKYYKIKVKPMPADLSE 397          

HSP 2 Score: 27.7202 bits (60), Expect = 3.927e-31
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DE+TL+GI QYY  VE+ +
Sbjct:  232 DEITLEGIKQYYVNVEKEE 250          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.928e-31
Identity = 57/144 (39.58%), Postives = 92/144 (63.89%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+  +VE L  K+    ++   I++ + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED   +  +E+   T+I+++P  I
Sbjct:  247 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 390          

HSP 2 Score: 28.4906 bits (62), Expect = 3.928e-31
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VEE +
Sbjct:  227 DELTLEGIKQFYVNVEEEE 245          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.928e-31
Identity = 57/144 (39.58%), Postives = 92/144 (63.89%), Query Frame = 2
Query:   86 KSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI 517
            K  CL  L+  + + Q++IFCN+  +VE L  K+    ++   I++ + Q  R+ +  +FR+G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+A+N +T ED   +  +E+   T+I+++P  I
Sbjct:  247 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 390          

HSP 2 Score: 28.4906 bits (62), Expect = 3.928e-31
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VEE +
Sbjct:  227 DELTLEGIKQFYVNVEEEE 245          
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.661e-31
Identity = 60/152 (39.47%), Postives = 96/152 (63.16%), Query Frame = 2
Query:   74 KKGRKSTCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 529
            K+  K   L  L+  + + Q++IFCN+  +V+ L +++TE  ++   +H  M Q  R+ + H+FR G+ R L+ TDL  RGID+Q V++VIN+D P N E Y+HR+GR GRFG  G+++N +T +D   +  IEQ   T I+++P +I   I
Sbjct:  241 KEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392          

HSP 2 Score: 27.335 bits (59), Expect = 6.661e-31
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 1
Query:   28 DELTLKGITQYYAFVEERQ 84
            DELTL+GI Q+Y  VE+ +
Sbjct:  225 DELTLEGIKQFYVAVEKEE 243          
The following BLAST results are available for this feature:
BLAST of BQ623598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_ASHGO6.185e-3240.28ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
IF4A_CAEEL1.366e-3141.22Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A_PICST1.366e-3141.67ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_LODEL1.778e-3141.67ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_CANAL1.778e-3141.67ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_DEBHA3.016e-3140.97ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
FAL1_CANGA3.927e-3140.00ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A_YEAST3.928e-3139.58ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS73.928e-3139.58ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_SCHPO6.661e-3139.47ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00689 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623598 ID=BQ623598; Name=BQ623598; organism=Citrus sinensis; type=EST; length=636bp
CAAAAACCATATGTTATTAATCTGATGGATGAGCTTACTCTCAAGGGAAT
TACCCAATACTATGCTTTTGTTGAAGAAAGGCAGAAAGTCCACTTGCCTC
AACACACTTTTCTCTAAGTTGCAAATTAATCAATCTATCATTTTCTGCAA
TTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATTACAGAACTTGGGT
ACTCTTGTTTTTATATCCATGCAAAGATGCTGCAAGACCATCGCAACAGA
GTATTTCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGA
CCTATTTACGAGGGGTATAGACATTCAAGCAGTGAATGTTGTCATTAACT
TTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTGGTCGATCT
GGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACTTACGAGGA
CCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGAAATTAAGC
AGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGATTTATGGCC
GGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCTGAGGCTGT
TGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCA
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