BQ623600

Overview
NameBQ623600
Unique NameBQ623600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:853..1427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L+A+P +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  M      P +  A +V  +RK+KGLKE++   ++F
Sbjct:  624 LSARPTILEPLMKLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPM------PESILADMVKQLRKKKGLKEEIPKPTDF 736          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 2
Query:    2 SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            + L+AKP +LEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W  +      P +    LV  +RK+KGLKE++   ++F
Sbjct:  622 AMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPV------PESMLLDLVKQLRKKKGLKEEIPKPTDF 736          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 349
            LTAKP LLEP+  ++I+AP + LG I +++ +KRG + + +Q+    +  I A +PV E+F  +  LR AT+G+A     F  W  +      P +    LV  IR+RKGLK +
Sbjct:  621 LTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQGA--VARIIAEIPVAETFDLAEQLRGATAGKAIWGQEFSRWAPV------PDSMLLDLVRKIRERKGLKPE 726          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L+A+P LLEP+  ++I+     +G + SVLN+ RG + +  Q+       ++A LPV+ESF  S  LRAA +G+ F    F  W         P +     V  +RK+KGLKE++   ++F
Sbjct:  624 LSARPTLLEPLMRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQEYMAF--LRAELPVLESFNISDELRAAAAGKIFWSMQFARWAPF------PESMLGDFVKQLRKKKGLKEEIPKPTDF 736          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L+A+P +LEP+  ++I+     +G + SV+N+ RG + +  Q+       ++A LPV+ESF  S  LRAA +G+ F    F  W         P +  A  V  +RK+KGLKE++   ++F
Sbjct:  624 LSARPTILEPLVRLDIKVAPDYIGAVTSVINKHRGKILDMTQQEYMAF--LRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPY------PESMLADFVKQLRKKKGLKEEIPKPTDF 736          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L A P LLEP+  V IQ P+  +GG  S +  +RG V   M+  G  +  IKA +PV E FGF+G +R+AT G+A     F  ++ +      P       V  IR RKGLK +M   S++
Sbjct:  615 LMANPTLLEPMQYVFIQVPQDQMGGAMSEIQGRRG-VILSMETEGD-MITIKAKMPVAEMFGFAGAIRSATEGRALWSTEFAGFEPI------PANMMLDTVRQIRTRKGLKPEMPTPSDY 727          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L+A+P LLEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W         P +     V  +RK+KGLKE +   ++F
Sbjct:  624 LSARPTLLEPLVRLDIKVAPDYIGSVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFARWAPY------PESMLVDFVKQLRKKKGLKEDIPKPTDF 736          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L A   LLEPV  ++I  P   +G   S +  +RG VF +MQ  G  +  +    PV E FGF+G +R+AT G+A     F  ++++      P      +V  IRKRKGLKEQM   S++
Sbjct:  616 LIAGDSLLEPVQKIQISVPMDQMGAATSQIQGRRGQVF-DMQSEGDTI-TVVGKAPVAELFGFAGDIRSATEGRAMWNTEFAGFELV------PNNLVKDVVVAIRKRKGLKEQMPTPSDY 728          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            LTAKP +LEP+  ++I+ P + +G I +V+ +KRG + E  Q   +    + A +PV ESF  +  LR  T+G+A     F  W  +      P +    LV+ IR RKGLK +   L +F
Sbjct:  619 LTAKPTILEPILKLDIRTPMEYIGNISTVITKKRGKLIEVQQMETSA--RVIAEIPVSESFDIADMLRNVTAGKAIWGQEFSRWAPV------PESMLMDLVSKIRTRKGLKPEPPKLEDF 731          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            LTA+P +LEP+  ++I++P + +G I SV+ +KRG + E  Q   T    + A +PV ESF  +  LR  T+G+A     F  W  +      P      L+A IR RKGLK +     +F
Sbjct:  621 LTARPTILEPILKLDIRSPMEYIGNISSVITKKRGKLIEVQQMETTA--RVIAEIPVSESFDIADMLRNVTAGKAIWGQEFSRWAPV------PENMLMDLIAKIRTRKGLKPEPPKPEDF 733          
The following BLAST results are available for this feature:
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EF2_THENV2.723e-1335.54Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRIL3.557e-1334.96Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_STAMF1.035e-1237.72Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_PYRAE1.351e-1234.71Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
EF2_PYRCJ1.765e-1233.88Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_METTP2.305e-1238.02Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_PYRAR5.136e-1234.71Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_METB65.136e-1237.19Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_DESMO6.707e-1235.54Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_DESK18.760e-1235.54Elongation factor 2 OS=Desulfurococcus kamchatkens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00691 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623600 ID=BQ623600; Name=BQ623600; organism=Citrus sinensis; type=EST; length=575bp
TTCCCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCG
AAATACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAAT
CAGAAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCT
TTACAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAG
GCACTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTT
GATCACTGGGACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGC
TGCACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAA
TGACACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGAC
ATCAAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCA
AATGACACCGCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGA
CATCAAGGGTGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTG
TTTCAAAGTTTTTCAATATCCTCAT
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