BQ623600

Overview
NameBQ623600
Unique NameBQ623600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:853..1427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_METAC (Elongation factor 2 OS=Methanosarcina acetivorans GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L A+  LLEP   V +Q P+  +GG    L  +RG +   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++ S  L        +V  IR+RKGLK+++   S+F
Sbjct:  615 LMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRGIILN-MTTEGD-LAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDVVPSSILN------DIVGQIRERKGLKKELPKASDF 727          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            L A+  LLEP   V +Q P+  +GG    L  +RG V   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +   ++V  IR+RKGLK+ +   S++
Sbjct:  615 LMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRG-VILNMTTEGD-LAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDVV------PSSILTEIVGQIRERKGLKKDLPKASDY 727          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:    8 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 340
            L  +P LLEP+  ++I+AP + L  I +VL +KRG +   ++  G  +  I A +PV ESF  +G LR+AT+G+AF    F  W  +      P      L+A IR+RKGL
Sbjct:  621 LDGRPTLLEPLQKLDIRAPMEYLSNITAVLTRKRGRII-NVETTGV-MARIIAAIPVAESFDLAGELRSATAGRAFWGVEFYGWAPV------PDQMLQDLIAKIRQRKGL 723          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EF2_METS5 (Elongation factor 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 40/123 (32.52%), Postives = 70/123 (56.91%), Query Frame = 2
Query:    2 SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 370
            + L +KP LLEP+  ++I+ P + +G + +VL++KRG V   M + G+ +  I A +PV ES+  +  LR +T G+AF    F  W  +      P +    ++  IR+RKGL +++  + +F
Sbjct:  620 AMLMSKPTLLEPLQKLDIRVPMEFVGNVTAVLSRKRGKVL-NMTQSGS-VARILAEIPVSESYELASDLRGSTGGRAFWGTEFSKWAPV------PDSILTDVILKIRERKGLPKELPKVEDF 734          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EFG_SULDN (Elongation factor G OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   14 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 262
            A+P +LEP+  VE++ PE  +G +   LN++RG V     R G  +  + A++P+ E FG+S  LR+AT G+A     FDH++
Sbjct:  600 ARPAILEPLMKVEVEVPEDYMGDVIGDLNRRRGQVTNMGDRSGNKI--VDAFVPLAEMFGYSTDLRSATQGRATYSMEFDHYE 680          
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Match: EFG_NOCSJ (Elongation factor G OS=Nocardioides sp. (strain BAA-499 / JS614) GN=fusA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   14 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHW 259
            AKP LLEP++ VE+  PE  LG +   +N +RGH+  + +R G  +  I A +P+ E FG+ G LR+ TSGQA     FD +
Sbjct:  606 AKPVLLEPMFAVEVTTPETFLGTVIGDINSRRGHIQAQEERHGDMV--ISALVPLSEMFGYVGDLRSKTSGQASYSMEFDSY 685          
The following BLAST results are available for this feature:
BLAST of BQ623600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EF2_METAC3.329e-1137.19Elongation factor 2 OS=Methanosarcina acetivorans ... [more]
EF2_METMA5.678e-1136.36Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_AERPE5.678e-1138.74Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_METS57.416e-1132.52Elongation factor 2 OS=Metallosphaera sedula (stra... [more]
EFG_SULDN9.685e-1138.55Elongation factor G OS=Sulfurimonas denitrificans ... [more]
EFG_NOCSJ9.685e-1142.68Elongation factor G OS=Nocardioides sp. (strain BA... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00691 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00691 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623600 ID=BQ623600; Name=BQ623600; organism=Citrus sinensis; type=EST; length=575bp
TTCCCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCG
AAATACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAAT
CAGAAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCT
TTACAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAG
GCACTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTT
GATCACTGGGACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGC
TGCACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAA
TGACACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGAC
ATCAAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCA
AATGACACCGCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGA
CATCAAGGGTGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTG
TTTCAAAGTTTTTCAATATCCTCAT
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