BQ623603

Overview
NameBQ623603
Unique NameBQ623603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623603_ssr446 microsatellite BQ623603_ssr446:446..457. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:172..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  117 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 392
            AITC  VTG+L PC+ +LR+GG+ P P CC G + L GA RT  DR+ AC C K A   +  +  ++A+ LP +CG+S    I+PN +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGK-PTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQLK-VRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  120 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 392
            + CGQV  SLA CI FL  G   P   CC GV++L   A T+ DR+AAC C+K A    P I  + A+ LP++CGV I   IS  T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.420e-16
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 3
Query:  105 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVS-IPYKISPNTDCSRV 392
            PV  AI+C QV  ++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK   +S  G+    AA LP  C V+ +   ISPN DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  114 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 392
            +AI+C  V   L PC+++L +G   PP  CC+GV+SL  A  T+ D++AAC C+K    S+  +   +A  L   CG S+P   SP  DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  117 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYR--SIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 395
            AI+C  V  +L PC+ ++  GG  P   CCNG+R L+  A +  D+Q  C C+K      S   I    AA LP +CGV +PYKI P+T+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  117 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI---PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 395
            A++C  V   L PC++++  GG  P   CCNG+ +L   A+T+ DRQ  C C+K A   +   P    N A  LP +CGV +PYK SP+TDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQN-ALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 3
Query:  120 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 392
            + CGQV  +L+ C+ FL      P   CC GV  L   A T  D++ AC C+K A    P I  + A+ LP +CGV I   IS  T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 31/90 (34.44%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  123 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISP---NTDC 383
            TCG V G+L PC+ F++   + P   CC+G + L+G  +T P R  AC C++ A ++   I+  + + +P+ CG+ +  K+ P   N DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 28/90 (31.11%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  126 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY-KISPNTDCSRV 392
            CG+V   + PC+ F++   + P   CC+G + L+   +TT  ++ AC C+  A + I GI   + A +P++CG++     I+ + DCS++
Sbjct:   35 CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124          
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Match: NLT11_PARJU (Probable non-specific lipid-transfer protein (Fragment) OS=Parietaria judaica GN=PMAI PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = 3
Query:  123 TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISP---NTDCSRV 392
            TCG +  +L PC+ F++   + P   CC+G + L+G  +T P R  AC C++ A ++   I+  + + +P+ CG+ +  K+ P   N DC  V
Sbjct:    3 TCGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDCKTV 94          
The following BLAST results are available for this feature:
BLAST of BQ623603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_HELAN7.563e-1844.57Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO1.863e-1645.05Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA5.420e-1643.30Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP8_ARATH1.577e-1539.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPA_ARATH4.588e-1540.00Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH1.022e-1440.63Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPB_RICCO2.131e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT13_PARJU1.058e-1134.44Probable non-specific lipid-transfer protein 1 OS=... [more]
NLT22_PARJU6.856e-1131.11Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT11_PARJU8.954e-1132.26Probable non-specific lipid-transfer protein (Frag... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00694 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00694 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623603 ID=BQ623603; Name=BQ623603; organism=Citrus sinensis; type=EST; length=631bp
GAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAAAATCCTC
ATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGAC
TGCCCCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCTTGG
CTCCATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCCCCA
TGCTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGA
CCGCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCCCCG
GCATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTCAGC
ATTCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTGAAG
TTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAA
ATAAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAGTCTCCACT
TGTGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAATATCA
TATTAAATATGTAAACGTGATCTGTGTTTTGAGTGATTAATTCTAGTTAT
TTTGGGGGATTATCTTAAAAAAAAAAAAAAA
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