CA588029

Overview
NameCA588029
Unique NameCA588029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7794 contig Csv1_Contig7794:216..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_MESVI (Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma viride GN=ycf65 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.003e-21
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 282
            + VLKF+W+EKN+ + +DQ +   G  P+++YFFWPRKDAWEELK  L +KPWIS    I LLNQ TD+IN WQ+
Sbjct:   20 KFVLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESIALLNQTTDVINYWQE 93          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_NOSP7 (Probable 30S ribosomal protein PSRP-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F4413 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.922e-21
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGN 294
            + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK  LESK WI+    + LLN+AT++IN WQ+ G N
Sbjct:    3 KFILKILWLDENVALAVDQIV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRVELLNKATEVINYWQEEGRN 80          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_GUITH (Probable 30S ribosomal protein 3, chloroplastic OS=Guillardia theta GN=ycf65 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.491e-20
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   55 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQ 282
            P+  LK +W++ N+ +A+DQ I G GT PL+ YFFWPR DAWE++K  LESKPWI +K  I LLN+ T++IN WQ+
Sbjct:    2 PKFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKERIELLNKTTELINCWQE 76          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_SYNP6 (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1758_d PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.337e-20
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            R  +K +W+ +N+ +A+DQ + G  T PL+ Y+FWPR DAWE+LKT LESK WI++   + LLNQAT++IN WQ+ G
Sbjct:   16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELLNQATEVINYWQEEG 91          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_SYNE7 (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus elongatus (strain PCC 7942) GN=mut3G PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.337e-20
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            R  +K +W+ +N+ +A+DQ + G  T PL+ Y+FWPR DAWE+LKT LESK WI++   + LLNQAT++IN WQ+ G
Sbjct:   16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELLNQATEVINYWQEEG 91          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_ACAM1 (Probable 30S ribosomal protein PSRP-3 OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_2922 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.337e-20
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            + +LK +W+++N+ LA+DQ + G G+ PL+ YFFWPR DAWE LKT LE K WI +   I +LN+AT++IN WQ+ G
Sbjct:    3 KFILKVLWLDENVALAVDQVV-GNGSSPLTSYFFWPRNDAWENLKTELEKKTWIDEVERISILNKATEVINYWQEEG 78          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_PROMA (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus GN=Pro_1593 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.664e-20
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   49 EKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNLT 300
            ++ R +LK +W+  N+ LA+DQ + G GT PL+ YFFWPR+DAWE LKT LE K WI+    + +LN+AT++IN WQ+ G   T
Sbjct:   27 DEGRFLLKILWLPDNVALAVDQIVGG-GTSPLTAYFFWPREDAWETLKTELEDKAWITDNERVEVLNKATEVINYWQEEGKGKT 109          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_TRIEI (Probable 30S ribosomal protein PSRP-3 OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_3451 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.661e-20
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   58 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSG 288
            + +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LK  LE K WIS+   + LLN+AT+II+ WQ+ G
Sbjct:    3 KFILKVVWLDDNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQLKKELEGKHWISEADRVALLNKATEIISYWQEEG 78          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_CYAA5 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain ATCC 51142) GN=cce_1753 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.661e-20
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   43 QLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQ 279
            QLE PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW+ELK  LE+K WI +   I +LN+AT++IN WQ
Sbjct:    9 QLE-PRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETERIEILNKATEVINYWQ 85          
BLAST of CA588029 vs. ExPASy Swiss-Prot
Match: RRP3_EUGGA (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena granulata GN=ycf65 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.262e-19
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   52 KPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQATDIINLWQQSGGNL 297
            K  L+LKF+W+EK+I + LDQ + G    PL+++FFWP+KDAWEE+K  LES+ WI+Q   + LLN  T++IN WQ+   N+
Sbjct:    2 KKELILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSDSVNLLNNITEVINFWQERDTNV 82          
The following BLAST results are available for this feature:
BLAST of CA588029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_MESVI3.003e-2157.33Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_NOSP73.922e-2154.43Probable 30S ribosomal protein PSRP-3 OS=Nostoc pu... [more]
RRP3_GUITH1.491e-2055.26Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_SYNP64.337e-2051.95Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_SYNE74.337e-2051.95Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_ACAM14.337e-2051.95Probable 30S ribosomal protein PSRP-3 OS=Acaryochl... [more]
RRP3_PROMA5.664e-2050.00Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_TRIEI9.661e-2053.25Probable 30S ribosomal protein PSRP-3 OS=Trichodes... [more]
RRP3_CYAA59.661e-2054.43Probable 30S ribosomal protein PSRP-3 OS=Cyanothec... [more]
RRP3_EUGGA1.262e-1950.00Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionGS1410 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.2 5 similar to plastid-specific ribosomal protein [Spinacia oleracea] (AF239218), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588029 ID=CA588029; Name=CA588029; organism=Citrus sinensis; type=EST; length=475bp
GCAACCCCAGTAGAAACTAAGAAGGCGGGGGTGTCAGTGAAGCAATTGGA
GAAGCCAAGGCTGGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTC
TAGCTCTTGACCAGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAA
TACTTCTTTTGGCCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCT
TGAGAGCAAACCCTGGATTTCCCAGAAAATGATGATTATACTTCTAAATC
AGGCCACTGATATTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACT
ACTTAGTTGGATGAAAATTCCGGTTTCTCCGTGAGTTCTCATCGTTTTTG
TATTTCAGTTATTGGATTTGATTTGTATAATTGAAACCTTGTTCATATCT
GCATTACATCGGACACGAGTTGGCTCTGTAATTTGGTTGGTGTTGGCAAA
TTTTTTAATTAATGGGCGTAATGAA
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