CA588030

Overview
NameCA588030
Unique NameCA588030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:811..1595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 48/93 (51.61%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   24 VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 296
            V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  230 VILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  155 PLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 305
            P  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  155 PLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 47/100 (47.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  155 PLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 308
            P  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  154 PLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   18 AKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 308
            AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  160 AKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 305
            P  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  162 PVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  + ++  +PG K+    +AE+  V  T  V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  166 PLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  165 PVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
BLAST of CA588030 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.742e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:    3 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 302
            P  + AK VV + GHD    +   +++  +G++  +PG K+     AE   V  + EV PG+   GM V EI   PRMGP FGAM++SG+K A   +K+L
Sbjct:  161 PLFISAKAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
The following BLAST results are available for this feature:
BLAST of CA588030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
THI4_YEAST2.120e-1651.61Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO1.052e-1547.00Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.061e-1545.54Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB6.820e-1547.00Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO2.591e-1444.12Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAR4.420e-1439.18Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_AERPE4.420e-1443.56Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_SULTO1.680e-1337.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULAC2.194e-1339.00Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METS53.742e-1339.00Putative thiazole biosynthetic enzyme OS=Metallosp... [more]

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Properties
Property NameValue
Genbank descriptionGS1598 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD15.2(98) 5 similar to thiamin biosynthesis protein thi1 [Citrus sinensis](CAB05370), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588030 ID=CA588030; Name=CA588030; organism=Citrus sinensis; type=EST; length=786bp
ATCCCAATGTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGAT
GGGCCTTTTGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGAT
TGAGGAAGTGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATG
CTATTGTGAGGCTGACCAGGGAGGTTGTGCCTGGTATGATAGTTACCGGC
ATGGAAGTTGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGG
AGCAATGATGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCAC
TGGGCCAGCCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCT
GAGCTGATCTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATT
TGGTAATAACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACT
CTGGCAAAAAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCG
AATAATGAGATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGG
TCCATCATGGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACC
GTTGTGAGTTTTTCGGAGGTGAATTTGCAGTTGCGTATCTAGTCCTTGTT
ATCTGTGTTATGTGTAGGACTGCCCCTTGGGCTGTTCCCTTTTCCTTGCT
TTGTATGTTTATAACTTGAGGCATCAGCCAATGGGGAAAAGTGCTGATGT
GATTAAAGATCAATGATGAAGATCTGAGCTTACCTC
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