CA588039

Overview
NameCA588039
Unique NameCA588039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CA588039_ssr504 microsatellite CA588039_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3711 contig Csv1_Contig3711:1141..1656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB3_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS+SGRLLFAGY + +C VWD+L  + V     + + H+ R++CLG++ADG A+ TGSWD+ LKIW
Sbjct:  278 FSLSGRLLFAGYDDFNCNVWDSLKCERV----GILSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB3_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Rattus norvegicus GN=Gnb3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS+SGRLLFAGY + +C VWD+L  + V     + + H+ R++CLG++ADG A+ TGSWD+ LKIW
Sbjct:  278 FSLSGRLLFAGYDDFNCNVWDSLKCERV----GVLSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB3_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Homo sapiens GN=GNB3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS+SGRLLFAGY + +C VWD++ ++ V     + + H+ R++CLG++ADG A+ TGSWD+ LKIW
Sbjct:  278 FSLSGRLLFAGYDDFNCNVWDSMKSERV----GILSGHDNRVSCLGVTADGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB3_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Canis familiaris GN=GNB3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.552e-14
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS+SGRLLFAGY + +C +WD++  + V     + + H+ R++CLG++ADG A+ TGSWD+ LK+W
Sbjct:  278 FSLSGRLLFAGYDDFNCNIWDSMKGERV----GILSGHDNRVSCLGVTADGMAVATGSWDSFLKVW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_CAEEL (Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis elegans GN=gpb-1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLLFAGY + +C VWD++  +       +   H+ R++CLG++ DG A+CTGSWD+ LKIW
Sbjct:  278 FSKSGRLLFAGYDDFNCNVWDSMRQE----RAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_CAEBR (Guanine nucleotide-binding protein subunit beta-1 OS=Caenorhabditis briggsae GN=gpb-1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLLFAGY + +C VWD++  +       +   H+ R++CLG++ DG A+CTGSWD+ LKIW
Sbjct:  278 FSKSGRLLFAGYDDFNCNVWDSMRQE----RAGVLAGHDNRVSCLGVTEDGMAVCTGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_XENLA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Xenopus laevis GN=gnb1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWDTL A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDTLKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Rattus norvegicus GN=Gnb1 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Mus musculus GN=Gnb1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homo sapiens GN=GNB1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
The following BLAST results are available for this feature:
BLAST of CA588039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GBB3_MOUSE3.283e-1453.03Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_RAT4.288e-1453.03Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_HUMAN4.288e-1451.52Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_CANFA9.552e-1448.48Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CAEEL6.191e-1350.00Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB1_CAEBR6.191e-1350.00Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB1_XENLA2.353e-1251.52Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_RAT8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_MOUSE8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_HUMAN8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]

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Properties
Property NameValue
Genbank descriptionGS1409 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.1 5 similar to G protein beta subunit [Pisum sativum](AF170921), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588039 ID=CA588039; Name=CA588039; organism=Citrus sinensis; type=EST; length=516bp
CATTCTCCATATCGGGAAGGCTTCTTTTTGCCGGATACTCAAATGGTGAT
TGTTATGTGTGGGACACATTATTAGCAAAGGTTGTATTGAACTTGGGATC
TCTCCAGAACTCACATGAGGGCCGGATCACCTGTTTGGGTTTGTCAGCCG
ATGGAAGTGCCTTATGTACAGGAAGTTGGGACACAAACCTAAAGATTTGG
GCTTTTGGAGGGTACAGGAGGGTGCTCTGAGTCCTTGGGGAGTGAAAGGC
TTGTGAATCCTCTCTTAAATCTCAGGTTCTGGCTTACGTCATTTTGCTGC
TTCTTGCTTCCTTGATAGATTCCTTTGTATTTTTAGCTAGTTAATGTGGT
TTGAGAAATTGTAATCATCTGCTGTGGCTTCTTGTAATCTCCATGTGAAA
CACTGACCTTTTGACTAGGTGAAAAAAAAAAAAGAAAAAAAAATTGTTCG
AGAATCTGAACTAGTAGAAGCAGCAATTCAGTTGTTTCCACTTTCTCAGT
TTTTCTCTCTCTCTCT
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