CA588039

Overview
NameCA588039
Unique NameCA588039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CA588039_ssr504 microsatellite CA588039_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3711 contig Csv1_Contig3711:1141..1656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_DANRE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_CRIGR (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Cricetulus griseus GN=GNB1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Canis familiaris GN=GNB1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_PONAB (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Pongo abelii GN=GNB1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L A    +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDDRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB4_HUMAN (Guanine nucleotide-binding protein subunit beta-4 OS=Homo sapiens GN=GNB4 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWDTL      +   +   H+ R++CLG++ DG A+ TGSWD+ L+IW
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDTLKG----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB5_TAMST (Guanine nucleotide-binding protein subunit beta-5 OS=Tamias striatus GN=GNB5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L++WA
Sbjct:  291 FSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB5_RAT (Guanine nucleotide-binding protein subunit beta-5 OS=Rattus norvegicus GN=Gnb5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L++WA
Sbjct:  291 FSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB5_PONAB (Guanine nucleotide-binding protein subunit beta-5 OS=Pongo abelii GN=GNB5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L++WA
Sbjct:  291 FSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB5_MOUSE (Guanine nucleotide-binding protein subunit beta-5 OS=Mus musculus GN=Gnb5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L++WA
Sbjct:  333 FSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395          
The following BLAST results are available for this feature:
BLAST of CA588039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GBB1_DANRE8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CRIGR8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CANFA8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_BOVIN8.940e-1250.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_PONAB1.168e-1150.00Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB4_HUMAN1.525e-1148.48Guanine nucleotide-binding protein subunit beta-4 ... [more]
GBB5_TAMST1.992e-1149.25Guanine nucleotide-binding protein subunit beta-5 ... [more]
GBB5_RAT1.992e-1149.25Guanine nucleotide-binding protein subunit beta-5 ... [more]
GBB5_PONAB1.992e-1149.25Guanine nucleotide-binding protein subunit beta-5 ... [more]
GBB5_MOUSE1.992e-1149.25Guanine nucleotide-binding protein subunit beta-5 ... [more]

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Properties
Property NameValue
Genbank descriptionGS1409 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.1 5 similar to G protein beta subunit [Pisum sativum](AF170921), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588039 ID=CA588039; Name=CA588039; organism=Citrus sinensis; type=EST; length=516bp
CATTCTCCATATCGGGAAGGCTTCTTTTTGCCGGATACTCAAATGGTGAT
TGTTATGTGTGGGACACATTATTAGCAAAGGTTGTATTGAACTTGGGATC
TCTCCAGAACTCACATGAGGGCCGGATCACCTGTTTGGGTTTGTCAGCCG
ATGGAAGTGCCTTATGTACAGGAAGTTGGGACACAAACCTAAAGATTTGG
GCTTTTGGAGGGTACAGGAGGGTGCTCTGAGTCCTTGGGGAGTGAAAGGC
TTGTGAATCCTCTCTTAAATCTCAGGTTCTGGCTTACGTCATTTTGCTGC
TTCTTGCTTCCTTGATAGATTCCTTTGTATTTTTAGCTAGTTAATGTGGT
TTGAGAAATTGTAATCATCTGCTGTGGCTTCTTGTAATCTCCATGTGAAA
CACTGACCTTTTGACTAGGTGAAAAAAAAAAAAGAAAAAAAAATTGTTCG
AGAATCTGAACTAGTAGAAGCAGCAATTCAGTTGTTTCCACTTTCTCAGT
TTTTCTCTCTCTCTCT
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