CA588039

Overview
NameCA588039
Unique NameCA588039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CA588039_ssr504 microsatellite CA588039_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3711 contig Csv1_Contig3711:1141..1656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB5_HUMAN (Guanine nucleotide-binding protein subunit beta-5 OS=Homo sapiens GN=GNB5 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.992e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L++WA
Sbjct:  333 FSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB5_RABIT (Guanine nucleotide-binding protein subunit beta-5 OS=Oryctolagus cuniculus GN=GNB5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGRLLFAGY++    VWD L    V    S+   HE R++ L +S DG+A C+GSWD  L++WA
Sbjct:  291 FSLSGRLLFAGYNDYTINVWDVLKGARV----SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 353          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_DROME (Guanine nucleotide-binding protein subunit beta-1 OS=Drosophila melanogaster GN=Gbeta13F PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWDT+ A+       +   H+ R++CLG++ +G A+ TGSWD+ L++W
Sbjct:  278 FSKSGRLLLAGYDDFNCNVWDTMKAE----RSGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB_YEAST (Guanine nucleotide-binding protein subunit beta OS=Saccharomyces cerevisiae GN=STE4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 209
            FS SGRL+++ Y++  C VWD L  ++V   G L+  H GR+T +  S DG A+CTGSWD+ +KIW+ G
Sbjct:  357 FSASGRLMYSCYTDIGCVVWDVLKGEIV---GKLEG-HGGRVTGVRSSPDGLAVCTGSWDSTMKIWSPG 421          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB2_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C +WD +      +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSRSGRLLLAGYDDFNCNIWDAMKG----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB2_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Mus musculus GN=Gnb2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C +WD +      +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSRSGRLLLAGYDDFNCNIWDAMKG----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB2_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Homo sapiens GN=GNB2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C +WD +      +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSRSGRLLLAGYDDFNCNIWDAMKG----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB2_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS=Bos taurus GN=GNB2 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C +WD +      +   +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSRSGRLLLAGYDDFNCNIWDAMKG----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB1_HOMAM (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homarus americanus GN=GBETA1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SG+LL AGY + +C VWD++  +       +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  278 FSKSGKLLLAGYDDFNCNVWDSMRTE----RAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIW 339          
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB_LOLFO (Guanine nucleotide-binding protein subunit beta OS=Loligo forbesi PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 3
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL  GY + +C VWD L  +       +   H+ R++CLG++ DG A+ TGSWD+ LKIW
Sbjct:  279 FSKSGRLLLGGYDDFNCNVWDVLKQE----RAGVLAGHDNRVSCLGVTEDGMAVATGSWDSFLKIW 340          
The following BLAST results are available for this feature:
BLAST of CA588039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GBB5_HUMAN1.992e-1149.25Guanine nucleotide-binding protein subunit beta-5 ... [more]
GBB5_RABIT2.601e-1149.25Guanine nucleotide-binding protein subunit beta-5 ... [more]
GBB1_DROME2.601e-1145.45Guanine nucleotide-binding protein subunit beta-1 ... [more]
GBB_YEAST3.397e-1147.83Guanine nucleotide-binding protein subunit beta OS... [more]
GBB2_RAT5.795e-1145.45Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB2_MOUSE5.795e-1145.45Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB2_HUMAN5.795e-1145.45Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB2_BOVIN5.795e-1145.45Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_HOMAM5.795e-1145.45Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB_LOLFO7.568e-1146.97Guanine nucleotide-binding protein subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionGS1409 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.1 5 similar to G protein beta subunit [Pisum sativum](AF170921), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588039 ID=CA588039; Name=CA588039; organism=Citrus sinensis; type=EST; length=516bp
CATTCTCCATATCGGGAAGGCTTCTTTTTGCCGGATACTCAAATGGTGAT
TGTTATGTGTGGGACACATTATTAGCAAAGGTTGTATTGAACTTGGGATC
TCTCCAGAACTCACATGAGGGCCGGATCACCTGTTTGGGTTTGTCAGCCG
ATGGAAGTGCCTTATGTACAGGAAGTTGGGACACAAACCTAAAGATTTGG
GCTTTTGGAGGGTACAGGAGGGTGCTCTGAGTCCTTGGGGAGTGAAAGGC
TTGTGAATCCTCTCTTAAATCTCAGGTTCTGGCTTACGTCATTTTGCTGC
TTCTTGCTTCCTTGATAGATTCCTTTGTATTTTTAGCTAGTTAATGTGGT
TTGAGAAATTGTAATCATCTGCTGTGGCTTCTTGTAATCTCCATGTGAAA
CACTGACCTTTTGACTAGGTGAAAAAAAAAAAAGAAAAAAAAATTGTTCG
AGAATCTGAACTAGTAGAAGCAGCAATTCAGTTGTTTCCACTTTCTCAGT
TTTTCTCTCTCTCTCT
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