CA588039

Overview
NameCA588039
Unique NameCA588039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Washington navel orange leaf axil budcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CA588039_ssr504 microsatellite CA588039_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3711 contig Csv1_Contig3711:1141..1656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB4_RAT (Guanine nucleotide-binding protein subunit beta-4 OS=Rattus norvegicus GN=Gnb4 PE=2 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L          +   H+ R++CLG++ DG A+ TGSWD+ L+IW
Sbjct:  278 FSKSGRLLLAGYDDFNCSVWDALKG----GRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
[Close]
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB4_MOUSE (Guanine nucleotide-binding protein subunit beta-4 OS=Mus musculus GN=Gnb4 PE=2 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 200
            FS SGRLL AGY + +C VWD L          +   H+ R++CLG++ DG A+ TGSWD+ L+IW
Sbjct:  278 FSKSGRLLLAGYDDFNCSVWDALKG----GRSGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIW 339
[Close]
BLAST of CA588039 vs. ExPASy Swiss-Prot
Match: GBB2_CAEEL (Guanine nucleotide-binding protein subunit beta-2 OS=Caenorhabditis elegans GN=gpb-2 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 3 
Query:    3 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 203
            FS+SGR+LFAGY +    VWD+L         S+   HE RI+CL  S DG+A+C+ SWD  ++IWA
Sbjct:  294 FSLSGRILFAGYGDYRVGVWDSLKCA----RHSVLYGHENRISCLRTSPDGTAVCSASWDCTIRIWA 356
The following BLAST results are available for this feature:
BLAST of CA588039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GBB4_RAT7.568e-1146.97Guanine nucleotide-binding protein subunit beta-4 ... [more]
GBB4_MOUSE7.568e-1146.97Guanine nucleotide-binding protein subunit beta-4 ... [more]
GBB2_CAEEL9.885e-1147.76Guanine nucleotide-binding protein subunit beta-2 ... [more]

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Properties
Property NameValue
Genbank descriptionGS1409 Washington navel orange leaf axil bud Citrus sinensis cDNA clone DD3.1 5 similar to G protein beta subunit [Pisum sativum](AF170921), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CA588039 ID=CA588039; Name=CA588039; organism=Citrus sinensis; type=EST; length=516bp
CATTCTCCATATCGGGAAGGCTTCTTTTTGCCGGATACTCAAATGGTGAT
TGTTATGTGTGGGACACATTATTAGCAAAGGTTGTATTGAACTTGGGATC
TCTCCAGAACTCACATGAGGGCCGGATCACCTGTTTGGGTTTGTCAGCCG
ATGGAAGTGCCTTATGTACAGGAAGTTGGGACACAAACCTAAAGATTTGG
GCTTTTGGAGGGTACAGGAGGGTGCTCTGAGTCCTTGGGGAGTGAAAGGC
TTGTGAATCCTCTCTTAAATCTCAGGTTCTGGCTTACGTCATTTTGCTGC
TTCTTGCTTCCTTGATAGATTCCTTTGTATTTTTAGCTAGTTAATGTGGT
TTGAGAAATTGTAATCATCTGCTGTGGCTTCTTGTAATCTCCATGTGAAA
CACTGACCTTTTGACTAGGTGAAAAAAAAAAAAGAAAAAAAAATTGTTCG
AGAATCTGAACTAGTAGAAGCAGCAATTCAGTTGTTTCCACTTTCTCAGT
TTTTCTCTCTCTCTCT
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