CB250249

Overview
NameCB250249
Unique NameCB250249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250249 vs. ExPASy Swiss-Prot
Match: U7371_ARATH (UPF0737 protein AFP1 OS=Arabidopsis thaliana GN=AFP1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.555e-24
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  134 DMPCVSTTGDGPDGKRIEGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAHPLKHIVVN 328
            +MPCV T GDGP+GKR++G LYRY  GEEVRI+CVCHG FLSPA+FVKHAGG  V HPL+HIVVN
Sbjct:  273 EMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSPADFVKHAGGPHVDHPLRHIVVN 337          
BLAST of CB250249 vs. ExPASy Swiss-Prot
Match: U7374_ARATH (UPF0737 protein AFP4 OS=Arabidopsis thaliana GN=AFP4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:   80 KPTVAKKGVKEAVRDVLEDMPCVSTTGDGPDGKRIEGFLYRYRKG-EEVRIVCVCHGSFLSPAEFVKHAG-------GGDV-AHPLKHIVV 325
            K  V   G+++A R++LEDMPCVST   G DGKR+EGFLY Y    EEV+IVCVCHGSFLSPAEFV+H G       GGDV  +PL+HIVV
Sbjct:  223 KNNVENSGMEKA-RNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRHGGGTVSDDDGGDVMINPLRHIVV 312          
BLAST of CB250249 vs. ExPASy Swiss-Prot
Match: U7374_MAIZE (UPF0737 protein 4 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  101 GVKEAVRDVLEDMPCVSTTGDGPDGKRIEGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAHPLKHIVVNPYPIL 343
            G+ +  R ++++MP V T G   +G R+EGFLY+Y KGE VRIVC+CHGSFL+P+EFV+HAG G V +PL+HIVV+  P L
Sbjct:  182 GMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGE-VRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVVSATPNL 260          
BLAST of CB250249 vs. ExPASy Swiss-Prot
Match: U7373_MAIZE (UPF0737 protein 3 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  101 GVKEAVRDVLEDMPCVSTTGDGPDGKRIEGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAHPLKHIVVNPYPIL 343
            G+ +  R ++++MP V T G   +G R+EGFLY+Y KGE VRIVC+CHGSFL+P+EFV+HAG G V +PL+HIVV+  P L
Sbjct:  184 GMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGE-VRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVVSATPNL 262          
BLAST of CB250249 vs. ExPASy Swiss-Prot
Match: U7372_MAIZE (UPF0737 protein 2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  101 GVKEAVRDVLEDMPCVSTTGDGPDGKRIEGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAHPLKHIVVNPYPIL 343
            G+ +  R ++++MP V T G   +G R+EGFLY+Y KGE VRIVC+CHGSFL+P+EFV+HAG G V +PL+HIVV+  P L
Sbjct:  184 GMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGE-VRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVVSATPNL 262          
BLAST of CB250249 vs. ExPASy Swiss-Prot
Match: U7371_MAIZE (UPF0737 protein 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.762e-19
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  101 GVKEAVRDVLEDMPCVSTTGDGPDGKRIEGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGDVAHPLKHIVVNPYPIL 343
            G+ +  R ++++MP V T G   +G R+EGFLY+Y KGE VRIVC+CHGSFL+P+EFV+HAG G V +PL+HIVV+  P L
Sbjct:  315 GMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGE-VRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVVSATPNL 393          
The following BLAST results are available for this feature:
BLAST of CB250249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
U7371_ARATH1.555e-2475.38UPF0737 protein AFP1 OS=Arabidopsis thaliana GN=AF... [more]
U7374_ARATH4.682e-2161.54UPF0737 protein AFP4 OS=Arabidopsis thaliana GN=AF... [more]
U7374_MAIZE9.762e-1956.79UPF0737 protein 4 OS=Zea mays PE=2 SV=1[more]
U7373_MAIZE9.762e-1956.79UPF0737 protein 3 OS=Zea mays PE=2 SV=1[more]
U7372_MAIZE9.762e-1956.79UPF0737 protein 2 OS=Zea mays PE=2 SV=1[more]
U7371_MAIZE9.762e-1956.79UPF0737 protein 1 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionEST0012 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ013 similar to putative Arabidopsis protein (acc# NP_189598)POLYA: no, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250249 ID=CB250249; Name=CB250249; organism=Citrus sinensis; type=EST; length=656bp
AATGTAACCTCCAAGAAATACTGAGGTTGCAACATCTGAAAAATCAGGCA
AGTCCATGGCCGTGAAGAGTCAGTGGAACAAGCCAACAGTTGCTAAAAAA
GGAGTGAAGGAAGCAGTAAGAGATGTGCTGGAAGATATGCCTTGTGTGTC
TACAACAGGAGATGGCCCCGATGGAAAAAGAATTGAAGGTTTTCTTTACA
GATATAGGAAGGGTGAGGAAGTAAGGATCGTATGTGTTTGTCATGGGAGC
TTCCTCTCACCAGCCGAGTTTGTGAAGCATGCTGGTGGAGGCGATGTGGC
GCACCCACTAAAGCACATTGTTGTTAACCCTTATCCCATTTTGTAGAGCT
GCCATTAAGGGTTCATGATGCTTTAAAATCTCTTTATTTTACATCTTTTG
CGGGACGAGGCACTTGTATTGCGTTCAATACATGGAGCCTCCTGTTGGGA
AAAATAACAATTGTTACAGTGCACAAAATTGGTAAATCTACATAAGTAGT
TTTCTCCGCATCCAAGAAGATTAATTTCTTCAGCTTCTCGTCCATACTTA
TGGACCTCTTTTTCGAAATTCTAATCCGAAAAAGTCGGCAAAATGCAAGG
GTTCTGATTTGGAAGATAGCATTGCCATAGCCATCGGTTATTGCCGAAAT
GTTTTG
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