CB250264

Overview
NameCB250264
Unique NameCB250264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig111 contig Csv1_Contig111:1..301. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250264 vs. ExPASy Swiss-Prot
Match: ACA6_ORYSJ (Probable calcium-transporting ATPase 6, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os05g0495600 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.121e-14
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   40 SSIPAAASKLLLQSIFNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSAKKQMGVVIELPEGGFR 300
            S+I      +L+Q IF NT  EVV G+  K  ILG  TETA+LEFGL L      +      +KV+PFNS KK+M V I+LP GG R
Sbjct:  474 STISERVMAILIQGIFVNTASEVVKGDDGKNTILGLATETALLEFGLSLEEHLYDDYNKLTRIKVDPFNSVKKKMSVTIQLPNGGIR 560
[Close]
BLAST of CB250264 vs. ExPASy Swiss-Prot
Match: ACA10_ARATH (Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=ACA10 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.800e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   25 TPAFGSSIPAAASKLLLQSIFNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSAKKQMGVVIELPE 288
            +P   S +P+A + +L++ I +NT G V   E  + ++ G+PTE AIL + + LG DF A +  S  V+  PFNS KK+ GV ++ P+
Sbjct:  506 SPDSSSKLPSAFTSILVEGIAHNTTGSVFRSESGEIQVSGSPTERAILNWAIKLGMDFDALKSESSAVQFFPFNSEKKRGGVAVKSPD 593
The following BLAST results are available for this feature:
BLAST of CB250264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ACA6_ORYSJ1.121e-1448.28Probable calcium-transporting ATPase 6, plasma mem... [more]
ACA10_ARATH6.800e-1238.64Calcium-transporting ATPase 10, plasma membrane-ty... [more]

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Properties
Property NameValue
Genbank descriptionEST0032 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ041 similar to calcium-transporting ATPase1 (acc# NP_683331), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250264 ID=CB250264; Name=CB250264; organism=Citrus sinensis; type=EST; length=301bp
AAAGAAGTTGACAACTCCAAGGGGACTCCTGCATTTGGCTCTTCAATTCC
CGCTGCTGCTTCAAAATTATTACTTCAATCAATATTTAACAACACGGGGG
GAGAAGTTGTCATTGGCGAGGGCAACAAAACTGAGATACTGGGAACGCCC
ACTGAAACTGCTATTTTAGAGTTTGGGTTGCTGCTTGGTGGGGATTTCCA
AGCCGAACGACAGGCATCAAAAATTGTGAAAGTTGAACCTTTTAACTCTG
CGAAGAAGCAAATGGGAGTAGTTATAGAGCTTCCTGAAGGGGGATTCCGG
G
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