CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THENN (Methylthioribose-1-phosphate isomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.660e-31
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LMK G + AV+VGADR+A NGDTANKIGTYSLA+ AK +N+ FYVAAP+++ID T+ SG EI IEER A+E+  C     G ++A  G+ V NPAFDVT  +LIT IITEKGV+
Sbjct:  220 LMKRGMIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNVPFYVAAPISTIDPTIKSGDEIPIEERRAEEVTHCG----GNRIAPEGVKVLNPAFDVTENSLITAIITEKGVI 329          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNP2 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=mtnA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.660e-31
Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            M+ GR+ AV+VGADR+ ANGD ANKIGTYSLA+ AK HN+ F+VAAPL+++D +LS G++I IEER  KE+      +G+ ++   G+  +NPAFDVTPA+LIT IITEKG V
Sbjct:  228 MQQGRIDAVVVGADRITANGDAANKIGTYSLAIVAKAHNVPFFVAAPLSTVDFSLSDGKQIPIEERDPKEVY----QIGDTRICPEGVQFYNPAFDVTPAHLITAIITEKGAV 336          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNAS (Methylthioribose-1-phosphate isomerase OS=Syntrophus aciditrophicus (strain SB) GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.660e-31
Identity = 68/127 (53.54%), Postives = 88/127 (69.29%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            + IP           LMK GR+  ++VGADR+A NGDTANKIGTY+LA+ A  H++  YVAAPL++ID  LSSG EI IEER A+E+L  R   G  +A +G+ V+NPAFDVTP + I+ IITE G+
Sbjct:  227 ENIPVTLITDSMAGFLMKQGRIDCILVGADRIATNGDTANKIGTYTLAVLAAAHSVPLYVAAPLSTIDRKLSSGNEIPIEERPAEEILTIR---GVPIAPAGVEVYNPAFDVTPGHYISAIITEAGI 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOBB (Methylthioribose-1-phosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.660e-31
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LMK G++   +VGADR+AANGDTANKIGTYS+A+ AK + I FYVAAP++++DL L++G  I IEER+++E+   +   G Q+A  G+ V NPAFDVTPA  ITGIITEKGVV
Sbjct:  208 DSIPVTLISDNMAGWLMKTGQIDFCVVGADRIAANGDTANKIGTYSVAVLAKENRIPFYVAAPISTLDLKLANGDLIPIEERASEEVTQIK---GIQIAPEGVKVRNPAFDVTPARYITGIITEKGVV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.000e-30
Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 385
            +++IP            M    VSAV+VGADRV ANGDTANKIGTY LA+ AK H + FYVAAP +S DL L +G+EIVIEER ++EL       G ++AA GI VWNPAFDVTP  LIT GIITE GV
Sbjct:  218 YEQIPATLITDSMAAAAMAHRGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQELTDLN---GVRIAAQGIRVWNPAFDVTPHELITGGIITELGV 343          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.000e-30
Identity = 74/129 (57.36%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 385
            +++IP            M    VSAV+VGADRV ANGDTANK+GTY LA+ AK H I FYVAAP +S DL L +G+EI+IEER  +EL       G ++AA GI VWNPAFDVTP +LIT GIITE GV
Sbjct:  218 YEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVN---GVRIAAPGIGVWNPAFDVTPHDLITGGIITELGV 343          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BOVIN (Methylthioribose-1-phosphate isomerase OS=Bos taurus GN=MRI1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.000e-30
Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 385
            +++IP            M    VSAV+VGADRV ANGDTANK+GTY LA+ AK H I FYVAAP +S DL L +G+EIVIEER  +EL       G ++AA GI VWNPAFDVTP +LIT GIITE GV
Sbjct:  218 YEQIPATLIADSMAAAAMAHQGVSAVVVGADRVVANGDTANKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETGREIVIEERPDQELTDVN---GVRIAAPGIGVWNPAFDVTPHDLITGGIITELGV 343          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THISH (Methylthioribose-1-phosphate isomerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.307e-30
Identity = 70/130 (53.85%), Postives = 84/130 (64.62%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            D IP           LM+ GRV  V+VGADR+AANGDTANKIGTY+LA+ A+ H + F V AP ++ID+    G  I IEER   E+L   G  G+ VAA G   WNPAFDVTPA LI  I+TEKGVV +
Sbjct:  211 DGIPVDLICEGAAASLMRSGRVGWVVVGADRIAANGDTANKIGTYALAVLARHHGVRFMVVAPTSTIDMDTPDGAGIPIEERPVSEVL---GLAGQPVAAEGAGAWNPAFDVTPAELIDAIVTEKGVVER 337          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNS9 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain CC9902) GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.307e-30
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM+ G+V  V+VG DRVA NGD ANKIGTY+LAL A+ H + FYV AP +SID+T   G  I IEER   E+   R   GE V ASG+  WNPAFD+TPA+LITG+ITE GV+
Sbjct:  211 LMRRGQVDVVLVGCDRVAGNGDVANKIGTYNLALAARAHGVPFYVCAPSSSIDITTVDGDAITIEERPEDEITHFR---GELVCASGVRAWNPAFDITPAHLITGLITEFGVI 320          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSM (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain M21) GN=mtnA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LM+ G++   +VGADR+AANGDTANKIGTYS+A+ AK + I FYVAAP++++DL L++G  I IEER+++E+   +   G Q+A  G+ V NPAFDVTPA  ITGIITEKGVV
Sbjct:  208 DSIPVTLISDNMAGWLMRTGQIDFCVVGADRIAANGDTANKIGTYSVAVLAKENRIPFYVAAPISTLDLKLANGDLIPIEERASEEVTQIK---GIQIAPEGVKVRNPAFDVTPARYITGIITEKGVV 332          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_THENN7.660e-3161.40Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_SYNP27.660e-3158.41Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_SYNAS7.660e-3153.54Methylthioribose-1-phosphate isomerase OS=Syntroph... [more]
MTNA_GEOBB7.660e-3155.47Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_MOUSE1.000e-3058.14Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_HUMAN1.000e-3057.36Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]
MTNA_BOVIN1.000e-3058.14Methylthioribose-1-phosphate isomerase OS=Bos taur... [more]
MTNA_THISH1.307e-3053.85Methylthioribose-1-phosphate isomerase OS=Thioalka... [more]
MTNA_SYNS91.307e-3059.29Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_GEOSM1.706e-3054.69Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
back to top