CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSF (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain FRC-32) GN=mtnA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 73/128 (57.03%), Postives = 88/128 (68.75%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP            MK G ++A +VGADR+AANGDTANKIGTYS+A+ AK + I FYVAAP++++DL+L SG EI IEER A E+   +   G  VA  G+ V NPAFDVTPA  I GIITEKGVV
Sbjct:  208 DGIPVTLIADNMAGYFMKKGAITACVVGADRIAANGDTANKIGTYSVAVLAKENKIPFYVAAPVSTLDLSLKSGDEIPIEERHACEVTHLQ---GLPVAPEGVKVRNPAFDVTPAKYIAGIITEKGVV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ALCBS (Methylthioribose-1-phosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mtnA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +D IP           LM+ G++ AVIVGADR+ ANGDTANKIGTY+LA+ A+ HNI F VAAP++++D  L +G  IVIEER A E+   R   G+ +A     V+NPAFD+TPA LIT I+TE+GVV
Sbjct:  203 NDGIPVTLVADSCAGQLMQQGKIQAVIVGADRITANGDTANKIGTYNLAVLAQHHNIPFIVAAPVSTLDPALPNGSHIVIEERDANEV---RNVQGKSLAPEHCPVYNPAFDITPAQLITAIVTERGVV 328          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THESQ (Methylthioribose-1-phosphate isomerase OS=Thermotoga sp. (strain RQ2) GN=mtnA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.229e-30
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LMK G + AV+VGADR+A NGDTANKIGTYSLA+ AK +NI FYVAAP+++ID T+ SG+EI IEER  +E+  C     G ++A  G+ V NPAFDVT   LIT IITEKGV+
Sbjct:  220 LMKKGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIKSGEEIPIEERRPEEVTHCG----GNRIAPEGVKVLNPAFDVTENTLITAIITEKGVI 329          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEP1 (Methylthioribose-1-phosphate isomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=mtnA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.229e-30
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LMK G + AV+VGADR+A NGDTANKIGTYSLA+ AK +NI FYVAAP+++ID T+ SG+EI IEER  +E+  C     G ++A  G+ V NPAFDVT   LIT IITEKGV+
Sbjct:  220 LMKKGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIKSGEEIPIEERRPEEVTHCG----GNRIAPEGVKVLNPAFDVTENTLITAIITEKGVI 329          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_THELT (Methylthioribose-1-phosphate isomerase 2 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.229e-30
Identity = 67/113 (59.29%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +MK  ++   +VGADR+AANGDTANKIGTY+LA+ AK+HN+  YV AP ++IDL   +GQ+I IEERSA E+ C       QVA     V+NPAFDVTPA LI+GIITEKG+V
Sbjct:  221 VMKKFKIDLALVGADRIAANGDTANKIGTYNLAIVAKYHNVPLYVVAPTSTIDLKTPAGQDIPIEERSADEIRCVG---NSQVAPQESPVFNPAFDVTPAELISGIITEKGIV 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESRM (Methylthioribose-1-phosphate isomerase OS=Desulfotomaculum reducens (strain MI-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.911e-30
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 409
            LM    V  ++VGADR+ ANGD ANKIGTY +A+ A  HNI FYVAAPL++ID++LSSG+EI IEER  +E+  +  G G+ +A  G+ VWNPAFDVTP +L+  IITE+GVV    A++
Sbjct:  221 LMSKKMVDCIVVGADRITANGDVANKIGTYGVAVLANHHNIPFYVAAPLSTIDMSLSSGEEIPIEERDPQEV--THHG-GQPMAPEGVQVWNPAFDVTPNSLVKAIITERGVVLPPFAEN 337          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEMA (Methylthioribose-1-phosphate isomerase OS=Thermotoga maritima GN=mtnA PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.802e-30
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LMK G + AV+VGADR+A NGDTANKIGTYSLA+ AK +NI FYVAAP+++ID T+ SG+EI IEER  +E+  C     G ++A  G+ V NPAFDVT   LIT IITEKGV+
Sbjct:  220 LMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCG----GNRIAPEGVKVLNPAFDVTENTLITAIITEKGVI 329          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEPX (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter sp. (strain X514) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.965e-30
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIK 424
            L++DG++  ++VGADR+A NGDTANKIGT+ L++ AK +N+ FYV AP ++ID  + SG+EI+IEERS +E+       G ++A  GI V+NPAFDVTP   ITGIITEKG++     ++   +K
Sbjct:  224 LIRDGKIDVILVGADRIALNGDTANKIGTFMLSVIAKVYNVPFYVVAPTSTIDFEIESGKEIIIEERSPEEVTHIN---GVRIAPEGIEVYNPAFDVTPHENITGIITEKGIIKPPYKENILKLK 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEP3 (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.965e-30
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIK 424
            L++DG++  ++VGADR+A NGDTANKIGT+ L++ AK +N+ FYV AP ++ID  + SG+EI+IEERS +E+       G ++A  GI V+NPAFDVTP   ITGIITEKG++     ++   +K
Sbjct:  224 LIRDGKIDVILVGADRIALNGDTANKIGTFMLSVIAKVYNVPFYVVAPTSTIDFEIESGKEIIIEERSPEEVTHIN---GVRIAPEGIEVYNPAFDVTPHENITGIITEKGIIKPPYKENILKLK 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_TRIEI (Methylthioribose-1-phosphate isomerase OS=Trichodesmium erythraeum (strain IMS101) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.484e-30
Identity = 72/144 (50.00%), Postives = 92/144 (63.89%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFI 433
            + IP            MK G + AV+VGADR+AANGDTANKIGTYSLA+ ++ HNI  YVAAPL++ID  +S G EI IEER  KE+      +GE ++    +  +NPAFDVTPA LITGI+TE G V   G  + F +K  +
Sbjct:  215 ENIPVTLISDNMAAHCMKQGLIHAVVVGADRIAANGDTANKIGTYSLAIVSQAHNIPLYVAAPLSTIDFKISDGSEIPIEERDTKEIY----QVGETRICPKQVEFYNPAFDVTPAELITGIMTEHGTVL-PGELEQFRVKQLV 353          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_GEOSF1.706e-3057.03Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_ALCBS1.706e-3053.49Methylthioribose-1-phosphate isomerase OS=Alcanivo... [more]
MTNA_THESQ2.229e-3061.40Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_THEP12.229e-3061.40Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA2_THELT2.229e-3059.29Methylthioribose-1-phosphate isomerase 2 OS=Thermo... [more]
MTNA_DESRM2.911e-3055.83Methylthioribose-1-phosphate isomerase OS=Desulfot... [more]
MTNA_THEMA3.802e-3061.40Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_THEPX4.965e-3050.40Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]
MTNA_THEP34.965e-3050.40Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]
MTNA_TRIEI6.484e-3050.00Methylthioribose-1-phosphate isomerase OS=Trichode... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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