CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_RHOCS (Methylthioribose-1-phosphate isomerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=mtnA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 55/135 (40.74%), Postives = 70/135 (51.85%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSG-QEIVIEERSAKELLCSRGGLGE------QVAASGISVWNPAFDVTPANLITGIITEKGV 385
            H  +P           LM+ G V   +VG DRV A GD ANKIGTY  AL A    + F+VA P ++ID  L  G   I IE R  +E+    G   +      ++ A G  V N  FDVTPA L+TG ITE+G+
Sbjct:  213 HHGVPHTVVADNTGGHLMQHGLVDLAVVGTDRVTARGDVANKIGTYLKALAAHDTGVPFWVALPGSTIDWLLEDGVHGIPIETRGDEEVTEITGRTADGRIERVRIVADGSPVANYGFDVTPARLVTGFITERGL 347          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: EI2B2_ARCFU (Putative translation initiation factor eIF-2B subunit 2 OS=Archaeoglobus fulgidus GN=AF_2037 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            V  V+VGAD + ANG   NKIGT  +AL AK   + F VAA           G+ +VIEER A+E+        E++   G+ V NPAFDVTP + I  IITE G +
Sbjct:  182 VDCVVVGADTITANGALINKIGTSQIALAAKEARVPFMVAAETYKFSPKTLFGELVVIEERDAREV------APEEILKLGVKVRNPAFDVTPRDYIDVIITEIGAI 282          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: EI2B2_PYRAB (Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus abyssi GN=aIF-2BII PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.895e-13
Identity = 45/111 (40.54%), Postives = 57/111 (51.35%), Query Frame = 2
Query:   77 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 409
            V++GAD + ANG   NKIGT  +AL AK H +   +AA           GQ + IE R   E++        +     I VWNPAFDVTP   I  IITEKG++    A D
Sbjct:  199 VVMGADSITANGAVINKIGTSLIALTAKEHRVWVMIAAETYKFHPETMLGQLVEIEMRDPTEVIPEE---ELKTWPKNIEVWNPAFDVTPPEYIDVIITEKGIIPPYAAID 306          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: EI2B2_PYRHO (Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus horikoshii GN=PH0208 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 44/111 (39.64%), Postives = 57/111 (51.35%), Query Frame = 2
Query:   77 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 409
            V++GAD + ANG   NKIGT  +AL AK H +   +AA           GQ + IE R   E++        +     I VWNPAFDVTP   I  IITE+G++    A D
Sbjct:  199 VVMGADSITANGAVINKIGTSLIALTAKEHRVWVMIAAETYKFHPATMLGQLVEIEMRDPTEVIPEE---ELRTWPKNIEVWNPAFDVTPPEYIDVIITERGIIPPYAAID 306          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: EI2B2_METJA (Putative translation initiation factor eIF-2B subunit 2 OS=Methanocaldococcus jannaschii GN=MJ0122 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.223e-13
Identity = 46/112 (41.07%), Postives = 58/112 (51.79%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            +  V+VGAD + ANG   NKIGT  +AL A    + F  AA           G+ I IEERS +E+         +    GI + NPAFDVTPA  I  IITE G++   GA
Sbjct:  190 IDIVVVGADAITANGCLVNKIGTSQIALIANESRVPFLTAAETYKFHPKTIVGELIEIEERSPEEVAVF------EDKYKGIKIRNPAFDVTPAKYIDAIITEVGLIPPQGA 295          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: EI2B2_PYRFU (Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus furiosus GN=PF0122 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = 2
Query:   77 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADD 409
            V++GAD + ANG   N+IGT  +AL AK H +   +AA           GQ + IE R   E++        +     I V NPAFDVTP   I  IITEKGV+    A D
Sbjct:  199 VVMGADSITANGAVINQIGTALIALTAKEHRVWVMIAAETYKFHPETMLGQLVEIEMRDPTEVVPKE---ELETWPKNIEVLNPAFDVTPPEYIDVIITEKGVIPPYAAID 306          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_RHOCS4.820e-1740.74Methylthioribose-1-phosphate isomerase OS=Rhodospi... [more]
EI2B2_ARCFU1.005e-1443.93Putative translation initiation factor eIF-2B subu... [more]
EI2B2_PYRAB1.895e-1340.54Putative translation initiation factor eIF-2B subu... [more]
EI2B2_PYRHO3.233e-1339.64Putative translation initiation factor eIF-2B subu... [more]
EI2B2_METJA4.223e-1341.07Putative translation initiation factor eIF-2B subu... [more]
EI2B2_PYRFU1.358e-1139.64Putative translation initiation factor eIF-2B subu... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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