CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CLOTH (Methylthioribose-1-phosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.484e-30
Identity = 68/128 (53.12%), Postives = 87/128 (67.97%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP            MK+G +  VIVGADR+A NGDTANKIGTYSLA+ AK +NI FYVAAP T+ID ++ +G++I IEERS  E+   +   G ++A  G+ V NPAFDVTP   I+ IITEKG++
Sbjct:  206 DNIPVTLICDNMAGHFMKEGLIDCVIVGADRIALNGDTANKIGTYSLAVLAKENNIPFYVAAPTTTIDFSIETGEQIPIEERSPAEITHIK---GIRIAPEGVKVRNPAFDVTPNKYISAIITEKGII 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THEAB (Methylthioribose-1-phosphate isomerase OS=Thermosipho africanus (strain TCF52B) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.469e-30
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            MK G+++AVIVGADRVAANGD ANKIGTY +A+ AK H I FYVAAP ++IDL   +G++I IEER   E+  C     G+Q+A  G+ V+NPAFDVT A L+T IITEKGVV
Sbjct:  224 MKLGKINAVIVGADRVAANGDVANKIGTYMVAVLAKRHGIPFYVAAPTSTIDLNTKTGKDIPIEERKHTEVTHCG----GKQIAPDGVKVFNPAFDVTDAELVTAIITEKGVV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOUR (Methylthioribose-1-phosphate isomerase OS=Geobacter uraniireducens (strain Rf4) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.469e-30
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP            M+ G +   +VGADR+AANGDTANKIGTYS+A+ AK + I FYVAAP++++DL+L SG++I IEER ++E+   +   G  VA  G+ V NPAFDVTPA  I GIITEKGVV
Sbjct:  208 DGIPVTLISDNMAGYFMRKGEIDVCVVGADRIAANGDTANKIGTYSVAVLAKENKIPFYVAAPVSTLDLSLKSGEDIPIEERHSREVTHLQ---GLPVAPEGVKVRNPAFDVTPARYIAGIITEKGVV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CALS8 (Methylthioribose-1-phosphate isomerase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.469e-30
Identity = 70/128 (54.69%), Postives = 86/128 (67.19%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LMK G++  VIVGADR+A NGDTANKIGTYSL++ AK H I FY++AP+++ID  + SG EI IEERS  E+   R   G+++      V+NPAFDVTPA  IT IITEKGVV
Sbjct:  204 DGIPNTVICDNMAGYLMKLGKIDCVIVGADRIALNGDTANKIGTYSLSVLAKHHGIPFYISAPISTIDFNIKSGSEIPIEERSEDEI---RFFNGKKIVPDESKVFNPAFDVTPAENITAIITEKGVV 328          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ALHEH (Methylthioribose-1-phosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.469e-30
Identity = 74/133 (55.64%), Postives = 85/133 (63.91%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVTKAG 400
            D IP           LM+ GRV  VIVGADRVAANGDTANKIGTY+LAL  K H + F V AP ++IDL    G  I IEER  +ELL     LG+ +VAA G   WNP FDVTPA LI  ++TE+GVVT  G
Sbjct:  208 DGIPVRLIAEGAAPLLMQRGRVDWVIVGADRVAANGDTANKIGTYALALACKAHGVKFMVVAPSSTIDLDCPGGDRIPIEERPPEELL----WLGDRRVAAEGAGAWNPVFDVTPAELIDVLVTERGVVTDFG 336          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNSC (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain CC9605) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.106e-29
Identity = 68/113 (60.18%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM+ G V AV+VG DRV+ANGD ANKIGTY+LAL A+ H I FYV AP +SID     G+ I IEER A+E+   R   G  VAA G  VWNPAFD+TPA+L+TG ITE GV+
Sbjct:  211 LMRRGEVDAVMVGCDRVSANGDVANKIGTYNLALVARAHGIPFYVCAPGSSIDRATVDGEAITIEERDAEEITHVR---GMDVAAPGAQVWNPAFDITPAHLVTGFITEFGVL 320          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PELPD (Methylthioribose-1-phosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=mtnA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.106e-29
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            M  G ++  +VGADR+AANGDTANKIGTYS+A+ AK +NI FYVAAP++++DL+L  G +I IEER A+E+ C R   G  +A +G+ V NPAFDVTPA  I+ IITE G+V
Sbjct:  224 MSRGEITCCVVGADRIAANGDTANKIGTYSVAVLAKENNIPFYVAAPISTLDLSLCDGGKIPIEERPAEEVTCIR---GVDIAPAGVRVRNPAFDVTPARYISAIITENGIV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DEHE1 (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.445e-29
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            M+ G ++AV+VGADR+A NGDTANKIGTYSLA+ A  H I FYVAAP ++ D ++ SG++IVIEER  +E+   R   G+++A   I+V NPAFDVTPANLIT  ITE G++ +
Sbjct:  220 MQKGVINAVVVGADRIAKNGDTANKIGTYSLAVLALAHGIPFYVAAPSSTFDKSIESGRDIVIEERKPEEITQIR---GQRIAPENIAVANPAFDVTPANLITAFITENGIIRR 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_BACAN (Methylthioribose-1-phosphate isomerase 2 OS=Bacillus anthracis GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.445e-29
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +SA+IVGADR+ ANGDTANKIGT +LA+ AK+ +I FYVAAPL++ D+T  +G EIVIEER   E+       G+QVA  G +V+NPAFDVTP  LITGIITEKG++
Sbjct:  232 ISAIIVGADRIVANGDTANKIGTMNLAILAKYFDIPFYVAAPLSTFDITKQTGAEIVIEERDETEVTKI---FGKQVAPVGTTVYNPAFDVTPNELITGIITEKGII 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_THETN (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter tengcongensis GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            L++DG++  ++VGADR+A NGDTANKIGT+ L++ AK +N+ FYV AP ++ID  + +G EIVIEERS +E+       G ++A  GI V+NPAFDVTP   ITGIITEKG++
Sbjct:  224 LIRDGKIDIILVGADRIALNGDTANKIGTFMLSVVAKVYNVPFYVVAPTSTIDFNIETGAEIVIEERSPEEVTHIN---GVRIAPEGIDVYNPAFDVTPHENITGIITEKGII 333          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_CLOTH6.484e-3053.13Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]
MTNA_THEAB8.469e-3061.06Methylthioribose-1-phosphate isomerase OS=Thermosi... [more]
MTNA_GEOUR8.469e-3053.91Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_CALS88.469e-3054.69Methylthioribose-1-phosphate isomerase OS=Caldicel... [more]
MTNA_ALHEH8.469e-3055.64Methylthioribose-1-phosphate isomerase OS=Alkalili... [more]
MTNA_SYNSC1.106e-2960.18Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_PELPD1.106e-2958.04Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_DEHE11.445e-2957.02Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
MTNA2_BACAN1.445e-2961.68Methylthioribose-1-phosphate isomerase 2 OS=Bacill... [more]
MTNA_THETN1.887e-2954.87Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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