CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_SYNWW (Methylthioribose-1-phosphate isomerase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D+IP            M  G+V AVI GADR+A NGDTANKIGTYSLA+ AK+H I FYVAAPL++ D  +  G EI IEERSA+E+   +G     +    + V+NPAFD+TP +LIT II EKG++
Sbjct:  206 DKIPVTLLTDNMAGYTMSLGKVDAVITGADRIATNGDTANKIGTYSLAVLAKYHGIPFYVAAPLSTFDWNIKQGGEIPIEERSAEEVRTIKGSC---LTVPVVDVFNPAFDITPEHLITAIICEKGII 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PELCD (Methylthioribose-1-phosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LM+ G +  VIVGADR+AANGD ANKIGTYS+A+ AK H + FYVAAPL++IDL +  G  I IEER   E+  C       ++A  GI+V NPAFDVTPA LIT IITE+GVV
Sbjct:  208 DGIPVTLICDNMAGALMRQGEIDCVIVGADRIAANGDVANKIGTYSVAVLAKEHGLPFYVAAPLSTIDLKIPDGDHIPIEERDTSEVTHCG----PTRLAPEGINVRNPAFDVTPAGLITAIITERGVV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_MAGSM (Methylthioribose-1-phosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 69/113 (61.06%), Postives = 86/113 (76.11%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL-CSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            LM +G V AV+VG+DRVAANGD ANKIGTY+LA+ A+ H+I F+VAAPL+++DL   +G+EI IEERSA E+  C    +G + AA G+ V NPAFDVTPA LIT  I EKGV
Sbjct:  229 LMANGEVDAVVVGSDRVAANGDVANKIGTYTLAVLARRHDIPFFVAAPLSTVDLRCPTGREIPIEERSANEVTHC----MGIRSAADGVKVRNPAFDVTPAELITAFICEKGV 337          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSW (Methylthioribose-1-phosphate isomerase OS=Geobacillus sp. (strain WCH70) GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +K   ++AVIVGADR+AANGDTANKIGT+ LAL AK   I FYVAAPL++IDL   +G+EI IEER+ +E+       G ++A  G++V+NPAFDVTP +LIT IITEKG+V
Sbjct:  227 IKAKNITAVIVGADRIAANGDTANKIGTFGLALLAKAFGIPFYVAAPLSTIDLATKTGEEIPIEERNPEEVTHI---AGTRIAPEGVNVYNPAFDVTPHDLITAIITEKGIV 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSL (Methylthioribose-1-phosphate isomerase OS=Geobacter sulfurreducens GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 70/129 (54.26%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            D IP            MK G ++  +VGADR+AANGDTANKIGTYS+A+ AK +NI FYVAAP T++DL+L +G +I IEER ++E+       G  VA  GI V NPAFDVTPA  I+ IITE+GVV+
Sbjct:  208 DGIPVTLISDNMAGFFMKRGEIACCVVGADRIAANGDTANKIGTYSVAVLAKENNIPFYVAAPTTTLDLSLENGDQIPIEERHSREVTHLH---GFPVAPEGIRVRNPAFDVTPARYISAIITEQGVVS 333          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DEHSC (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.464e-29
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            MK G ++AV+VGADR+A NGDTANKIGTYSLA+ A  H I FYVAAP ++ D ++ SG +IVIEER  +E+   R   G+++A   I V NPAFDVTPANLI   ITE G++ +
Sbjct:  220 MKKGVINAVVVGADRIARNGDTANKIGTYSLAVLALAHGIPFYVAAPSSTFDKSIESGNDIVIEERKPEEITYLR---GQRIAPENIDVANPAFDVTPANLIAAFITENGIIRR 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DEHSB (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides sp. (strain BAV1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.464e-29
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            MK G ++AV+VGADR+A NGDTANKIGTYSLA+ A  H I FYVAAP ++ D ++ SG +IVIEER  +E+   R   G+++A   I V NPAFDVTPANLI   ITE G++ +
Sbjct:  220 MKKGVINAVVVGADRIARNGDTANKIGTYSLAVLALAHGIPFYVAAPSSTFDKSIESGNDIVIEERKPEEITYLR---GQRIAPENIDVANPAFDVTPANLIAAFITENGIIRR 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_BACCR (Methylthioribose-1-phosphate isomerase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.464e-29
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            ++A+IVGADR+ ANGDTANKIGT +LA+ AK+ NI FYVAAPL++ D+T  +G EI+IEER   E+       G+QVA  G  V+NPAFD+TP  LITGIITEKG++
Sbjct:  232 INAIIVGADRIVANGDTANKIGTMNLAILAKYFNIPFYVAAPLSTFDVTKETGAEIIIEERDETEVTKI---FGKQVAPIGTDVYNPAFDITPNELITGIITEKGII 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_BACAH (Methylthioribose-1-phosphate isomerase 2 OS=Bacillus thuringiensis (strain Al Hakam) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.464e-29
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQKT 442
            ++A+IVGADR+ ANGDTANKIGT +LA+ AK+ +I FYVAAPL++ D+T  +G EIVIEER   E+       G+QVA  G +V+NPAFDVTP  LITGIITEKG++     D   +I    +KT
Sbjct:  232 INAIIVGADRIVANGDTANKIGTMNLAILAKYFDIPFYVAAPLSTFDITKQTGAEIVIEERDETEVTKI---FGKQVAPVGTTVYNPAFDVTPNKLITGIITEKGIIC---GDYKREIASLFEKT 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA2_BACHK (Methylthioribose-1-phosphate isomerase 2 OS=Bacillus thuringiensis subsp. konkukian GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.218e-29
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            ++A+IVGADR+ ANGDTANKIGT +LA+ AK+ +I FYVAAPL++ D+T  +G EIVIEER   E+       G+QVA  G +V+NPAFDVTP  LITGIITEKG++
Sbjct:  232 INAIIVGADRIVANGDTANKIGTMNLAILAKYFDIPFYVAAPLSTFDITKQTGAEIVIEERDETEVTKI---FGKQVAPVGTTVYNPAFDVTPNKLITGIITEKGII 335          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_SYNWW1.887e-2952.34Methylthioribose-1-phosphate isomerase OS=Syntroph... [more]
MTNA_PELCD1.887e-2955.04Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_MAGSM1.887e-2961.06Methylthioribose-1-phosphate isomerase OS=Magnetoc... [more]
MTNA_GEOSW1.887e-2959.82Methylthioribose-1-phosphate isomerase OS=Geobacil... [more]
MTNA_GEOSL1.887e-2954.26Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_DEHSC2.464e-2957.02Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
MTNA_DEHSB2.464e-2957.02Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
MTNA2_BACCR2.464e-2959.81Methylthioribose-1-phosphate isomerase 2 OS=Bacill... [more]
MTNA2_BACAH2.464e-2955.20Methylthioribose-1-phosphate isomerase 2 OS=Bacill... [more]
MTNA2_BACHK3.218e-2960.75Methylthioribose-1-phosphate isomerase 2 OS=Bacill... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
back to top