CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESDG (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio desulfuricans (strain G20) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LM+ G V  V+VGADR+AANGD ANKIGTYS+AL A+ H I FYVAAPL++ID    SG++I IEER A+E+      +GE ++   G+ V+N AFDVTPA+LI GI+TE+GV+
Sbjct:  211 DGIPVTVACDNACGLLMQRGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGIPFYVAAPLSTIDRATPSGKQIPIEERPAEEVT----HVGETRITPEGVPVYNYAFDVTPAHLIAGIVTEQGVL 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BACLD (Methylthioribose-1-phosphate isomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 63/113 (55.75%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            MK+  +SAVIVGADR+A NGDTANKIGT+ LA+ AK   I F++AAPL++ D+++S G +I IEER   E+   R   G Q+A   + V+NPAFD+TP +LI+GIITEKG++T
Sbjct:  227 MKEKNISAVIVGADRIARNGDTANKIGTFGLAILAKAFQIPFFIAAPLSTFDVSISCGDDIPIEERDPDEV---RRINGTQIAPQEVPVFNPAFDITPHDLISGIITEKGIIT 336          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BACC1 (Methylthioribose-1-phosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGADDAFDIKDFIQKT 442
            ++A+IVGADR+ ANGDTANKIGT +LA+ AK+  I FYVAAPL++ D+T  +G EIVIEER   E+       G+QV   G +V+NPAFDVTP  LITGIITE+G++     D   +I    +KT
Sbjct:  232 INAIIVGADRIVANGDTANKIGTMNLAILAKYFGIPFYVAAPLSTFDITKQTGAEIVIEERDETEVTKI---FGKQVTPVGTTVYNPAFDVTPNELITGIITERGIIR---GDYKREIASLFEKT 350          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ACAM1 (Methylthioribose-1-phosphate isomerase OS=Acaryochloris marina (strain MBIC 11017) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 67/128 (52.34%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLG-EQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            + IP            M+   +  V+VGADR+AANGD ANKIGTYS+ALCAK HN+ FYVAAPL++ID  L+ G  I IEER   E+      +G   +   G+  +NPAFDVTPA LITGIITE GV
Sbjct:  216 EEIPVTLISDGMAAHCMQQNLIDVVVVGADRIAANGDAANKIGTYSVALCAKAHNLPFYVAAPLSTIDFDLADGGGIPIEERHPSEIY----QIGTTDICPKGVEFYNPAFDVTPAELITGIITEHGV 339          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_METCA (Methylthioribose-1-phosphate isomerase OS=Methylococcus capsulatus GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.724e-28
Identity = 68/134 (50.75%), Postives = 84/134 (62.69%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGAD 406
            DRIP           LMK G V  V+VGADR+AANGD ANKIGTYSLA+ A+ H +   V AP++++D   ++G++IV+EER  +ELL     LG     S I  WNP FDVTPA LI  I+TE GVVT    D
Sbjct:  213 DRIPATLLADSAAAWLMKSGAVQWVVVGADRIAANGDVANKIGTYSLAVLARHHGVKLMVVAPISTVDWATATGEDIVVEERDPRELLHPL-FLGSD---SVIGAWNPVFDVTPAALIDAIVTEAGVVTNPSPD 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_DESAP (Methylthioribose-1-phosphate isomerase OS=Desulforudis audaxviator (strain MP104C) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.724e-28
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM    +  VIVGADRVAANGD ANKIGTYSLA+ A+ H I FYVA PL+++DL  + G++I IEER   EL   R   G +VA  G++VWNPAFDVTP  LIT +IT+ GV+
Sbjct:  221 LMAREGLDLVIVGADRVAANGDVANKIGTYSLAVLARAHGIPFYVAVPLSTVDLRTAIGRDIPIEERDPAELTHFR---GRRVAPQGVAVWNPAFDVTPNELITALITDAGVL 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CARHZ (Methylthioribose-1-phosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.724e-28
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQ-VAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G V  V+VGADRV ANGD ANKIGTYSLA+ AK H I FYVAAP ++IDL L+SGQ+I IEER+  E+      +G++ +A   + V+NPAFDVTPA  ITGIIT++G+V
Sbjct:  219 VMSLGLVDLVVVGADRVTANGDVANKIGTYSLAILAKEHGIPFYVAAPYSTIDLNLTSGQDIPIEERNPDEV----RKIGDRLIAPPQVKVFNPAFDVTPAKYITGIITDRGIV 328          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_KLEP7 (Methylthioribose-1-phosphate isomerase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.558e-28
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 397
            LM  G+V AV VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T++D    +G  I IE+R+A E+    G  G  Q A +G +V+NPAFDVTPA LI+G + + GVVT A
Sbjct:  214 LMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRYCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPTGAAVYNPAFDVTPAGLISGWVLDSGVVTPA 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_GLOVI (Methylthioribose-1-phosphate isomerase OS=Gloeobacter violaceus GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.558e-28
Identity = 63/128 (49.22%), Postives = 88/128 (68.75%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 385
            H+RIP           ++  G V AV+VGADR+AANGDTANKIGT  +A+ A+ + + F+VAAP +++DL LSSG++I IE+R ++E+   R   G  +   G+  +NPAFDVTPA+L+TGII E GV
Sbjct:  208 HERIPVTVLADTMAAHVIGRGLVDAVVVGADRIAANGDTANKIGTCGVAIIARHYGVPFFVAAPWSTVDLNLSSGEQIPIEQRDSEEM---RAIEGVALCPQGVEFYNPAFDVTPASLVTGIIVESGV 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ENTS8 (Methylthioribose-1-phosphate isomerase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.558e-28
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            LM  G+V AV VGADR+AANGD ANKIGTYSLA+ AKFHN+ FYVAAP T++D    +G  I IE+R+A E+    G  G  Q A     V+NPAFDVTPA LI+G + + GVVT
Sbjct:  214 LMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAKFHNVPFYVAAPQTTLDPACPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPEDARVYNPAFDVTPAALISGWVLDSGVVT 328          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_DESDG2.086e-2853.49Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_BACLD2.086e-2855.75Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA_BACC12.086e-2853.60Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA_ACAM12.086e-2852.34Methylthioribose-1-phosphate isomerase OS=Acaryoch... [more]
MTNA_METCA2.724e-2850.75Methylthioribose-1-phosphate isomerase OS=Methyloc... [more]
MTNA_DESAP2.724e-2858.41Methylthioribose-1-phosphate isomerase OS=Desulfor... [more]
MTNA_CARHZ2.724e-2858.77Methylthioribose-1-phosphate isomerase OS=Carboxyd... [more]
MTNA_KLEP73.558e-2857.26Methylthioribose-1-phosphate isomerase OS=Klebsiel... [more]
MTNA_GLOVI3.558e-2849.22Methylthioribose-1-phosphate isomerase OS=Gloeobac... [more]
MTNA_ENTS83.558e-2858.26Methylthioribose-1-phosphate isomerase OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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