CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_CHLTE (Methylthioribose-1-phosphate isomerase OS=Chlorobium tepidum GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.558e-28
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 2
Query:    2 HDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            HD IP           LM+ G +   I GADR+ ANGDTANKIGTY+ A+ A++H + FY+AAP+++ID+T++ G EI IEER+  EL   R   G QVA     V N AFDVTP  LI GIITEKG V
Sbjct:  215 HDGIPFASISDSSSAILMQRGMIDFAITGADRITANGDTANKIGTYAHAISARYHGLPFYIAAPVSTIDITMAEGSEIPIEERNPDEL---RKIFGTQVATPTTPVVNFAFDVTPGTLIRGIITEKGAV 340          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_MICAE (Methylthioribose-1-phosphate isomerase OS=Microcystis aeruginosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.647e-28
Identity = 68/122 (55.74%), Postives = 83/122 (68.03%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL-------LCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 397
            M+   + AVIVGADR+AANGDTANKIGTYSLA+ AK HN+ FYVAAPL+++D +L  G  I IE+R + E+       LC R           ++ +NPAFDVTPA LIT IITEKG VT A
Sbjct:  234 MQQKLIDAVIVGADRIAANGDTANKIGTYSLAVVAKAHNLPFYVAAPLSTVDFSLKDGTGIPIEQRDSAEIYQVGTTTLCPR----------NVNFYNPAFDVTPAALITAIITEKGAVTPA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ROSS1 (Methylthioribose-1-phosphate isomerase OS=Roseiflexus sp. (strain RS-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +RIP            MK G +  VIVGADR+ ANGD ANKIGTYSLA+ A+ H I FYVAAP ++ID +L +G  I IEERS+ E+       G ++A  G+   +PAFDVTPA+L+T IITE GV+
Sbjct:  213 ERIPLTLITDNMAGYFMKRGDIDCVIVGADRIVANGDVANKIGTYSLAVLARAHRIPFYVAAPSSTIDCSLPNGDAIPIEERSSDEVTML---FGRRIAPEGVIAAHPAFDVTPADLVTAIITECGVI 337          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU5 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=mtnA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            D +P           LMK   +S VIVGADR+ ANGD ANKIGTY LA+ A  H + F V AP ++ID+ L SG EI++EER+  ELL   G    Q  A+ I V+NP FDVTPA+LI  I+TEKGVV +  A
Sbjct:  217 DGVPATLNVDSAAAHLMKSRGISWVIVGADRITANGDVANKIGTYQLAVLAMHHGVRFMVVAPSSTIDMALESGDEILLEERAGSELLEVNG----QRFAAEIEVFNPVFDVTPADLIDAIVTEKGVVERPNA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_HERA2 (Methylthioribose-1-phosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=mtnA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQ-VAASGISVWNPAFDVTPANLITGIITEKGV 385
            M+ G+V  +IVG+DR+AANGD ANKIGTY LA+ AK HNI  YVAAP ++IDL  + G  I IE+RS +E+      +G+Q +AA+GI V +PAFDVTPA+L+T IITE+G+
Sbjct:  225 MQQGQVDCIIVGSDRIAANGDVANKIGTYGLAVLAKAHNIPLYVAAPTSTIDLQTADGAAIPIEQRSTQEVT----HIGQQAIAAAGIKVAHPAFDVTPAHLVTAIITEQGI 332          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_KLEP3 (Methylthioribose-1-phosphate isomerase OS=Klebsiella pneumoniae (strain 342) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.927e-28
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVVTKA 397
            LM  G+V AV VGADR+AANGD ANKIGTYSLA+ A +H I FYVAAP T++D    +G  I IE+R+A E+    G  G  Q A  G +V+NPAFDVTPA L++G + + GVVT A
Sbjct:  214 LMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRYCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPMGAAVYNPAFDVTPAGLVSGWVLDSGVVTPA 330          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BACA2 (Methylthioribose-1-phosphate isomerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.927e-28
Identity = 64/113 (56.64%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            MK+  +SAVIVGADR+A NGDTANKIGTY LA+ A    I F+VAAPL++ DL + +G +I IEER   E+   R   G + A   + V+NPAFD+TP +LI+GIITEKG+VT
Sbjct:  227 MKEKHISAVIVGADRIAKNGDTANKIGTYGLAILANAFQIPFFVAAPLSTFDLQIENGDQIPIEERDPDEV---RQISGIRTAPEDVPVFNPAFDITPGSLISGIITEKGIVT 336          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANOR (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae GN=mtnA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+  +SG +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMATASGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGDLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANOP (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+  +SG +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMATASGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGDLIDAIVTERGVIAQ 342          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XANOM (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.035e-27
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 394
            LMK G V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V AP +++D+  +SG +I IE+R   EL    G  G +  A GI  WNP FDVTP +LI  I+TE+GV+ +
Sbjct:  231 LMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMATASGDQIEIEQRDPGELF---GVGGVRTVADGIHAWNPVFDVTPGDLIDAIVTERGVIAQ 342          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_CHLTE3.558e-2851.94Methylthioribose-1-phosphate isomerase OS=Chlorobi... [more]
MTNA_MICAE4.647e-2855.74Methylthioribose-1-phosphate isomerase OS=Microcys... [more]
MTNA_ROSS16.069e-2851.56Methylthioribose-1-phosphate isomerase OS=Roseifle... [more]
MTNA_PSEU56.069e-2851.13Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_HERA26.069e-2857.14Methylthioribose-1-phosphate isomerase OS=Herpetos... [more]
MTNA_KLEP37.927e-2856.41Methylthioribose-1-phosphate isomerase OS=Klebsiel... [more]
MTNA_BACA27.927e-2856.64Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA_XANOR1.035e-2753.04Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANOP1.035e-2753.04Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANOM1.035e-2753.04Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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