CB250284

Overview
NameCB250284
Unique NameCB250284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:782..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ROSCS (Methylthioribose-1-phosphate isomerase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +RIP            M+ G +  VIVGADR+ ANGD ANKIGTYSLA+ A+ H I FYVAAP ++IDL+L +G+ I IEERS  E+       G ++A  G    +PAFDVTP++L+T IITE GV+
Sbjct:  214 ERIPMTLITDTMAGHFMQRGAIDCVIVGADRIVANGDVANKIGTYSLAVLARAHGIPFYVAAPSSTIDLSLPNGEAIPIEERSPDEVTTC---FGRRIAPEGAVAAHPAFDVTPSHLVTAIITECGVI 338          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_HELMI (Methylthioribose-1-phosphate isomerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAA-SGISVWNPAFDVTPANLITGIITEKGV 385
            D IP           +MK   V  VIVGADR+ ANGD ANKIGTY +AL AK H I FYVAAP+++ DL+L SG +I IEER  +E+      +G+ + A  G+ V+NPAFDVTPA L+T  IT++GV
Sbjct:  206 DGIPVTLITDSMAAYVMKQKLVDLVIVGADRITANGDVANKIGTYGVALAAKAHGIPFYVAAPVSTFDLSLESGLQIPIEERDTEEV----RRVGDSITAPPGVPVYNPAFDVTPAELVTAFITDRGV 329          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BACCN (Methylthioribose-1-phosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = 2
Query:   68 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +SA+IVGADR+ ANGDTANK+GT +LA+ AK + I FYVAAPL++ D    +G EI+IEER   E+       G+Q+A +GI ++NPAFD+TP   I+GIITEKG++
Sbjct:  232 ISAIIVGADRIVANGDTANKVGTLNLAILAKHYQIPFYVAAPLSTFDTKKKTGNEIIIEERDETEVTKIN---GQQIAPAGIHIYNPAFDITPHEFISGIITEKGIL 335          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ANASP (Methylthioribose-1-phosphate isomerase OS=Anabaena sp. (strain PCC 7120) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKG 382
            MK G + AV+VGADR+AANGD ANKIGTYSLA+ AK HN+ F+VAAP+++ID  L+ G +I IEER+  E+      +G+  +   G+  +NPAFDVTPA LIT IITE G
Sbjct:  225 MKQGLIHAVVVGADRIAANGDAANKIGTYSLAIVAKAHNVPFFVAAPVSTIDFELADGSQIPIEERNPVEIY----QVGDTTLTPPGVKFYNPAFDVTPAELITAIITENG 331          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ANASK (Methylthioribose-1-phosphate isomerase OS=Anaeromyxobacter sp. (strain K) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 2
Query:    5 DRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            D IP           LM  G +  V+VGADR+AANGD ANKIGTY+LA+ A  H + FYVAAP +++DL   +G +I IEER A E++      G+++A +G+    PAFDVTPA L+T I+TE+GVV
Sbjct:  200 DGIPVTLLTDGMAGWLMARGEIGCVVVGADRIAANGDVANKIGTYALAVLAAHHRLPFYVAAPWSTVDLATPTGADIPIEERGADEVVML---AGQRIAPAGVPARYPAFDVTPAALVTAIVTERGVV 324          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFM (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain M12) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.306e-27
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTKAGA 403
            LMK G+V  VIVGADR+ ANGDTANKIGTY LA+ A+ H + F V A   ++D+  ++G+ I IE+R  +ELL   G  G +  A GI+ WNP FDVTP  LI  I+TE+GV+    A
Sbjct:  231 LMKSGQVQWVIVGADRICANGDTANKIGTYQLAITARHHGVKFMVVASAATVDMDTTAGEAIEIEQRDPEELL---GVSGVRTVAEGIAAWNPVFDVTPGALIDAIVTERGVIQSPDA 345          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_ENT38 (Methylthioribose-1-phosphate isomerase OS=Enterobacter sp. (strain 638) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.306e-27
Identity = 66/114 (57.89%), Postives = 80/114 (70.18%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGE-QVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            LM  G+V AV VGADR+AANGD ANKIGTYSLA+ AKFH I FYVAAP T++D    +G+ I IE+R A+E+    G  G  Q A     V+NPAFDVTPA LI+G + + GVV
Sbjct:  214 LMAKGQVDAVWVGADRIAANGDVANKIGTYSLAVLAKFHGIPFYVAAPQTTLDPHCPNGEAIPIEQRDAREVTGVAGSFGAVQWAPENAQVYNPAFDVTPAALISGWVLDTGVV 327          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_BACSU (Methylthioribose-1-phosphate isomerase OS=Bacillus subtilis GN=mtnA PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.306e-27
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   53 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 391
            MK+ ++SAVIVGADR+A NGDTANKIGTY LA+ A   +I F+VAAPL++ D  +  G +I IEER  +E+   R   G + A S + V+NPAFD+TP +LI+GIITEKG++T
Sbjct:  227 MKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEV---RQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMT 336          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA1_BACCR (Methylthioribose-1-phosphate isomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mtnA1 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.306e-27
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G++ AVIVG DRVAANGD ANKIGT  +++ AK++NI FYVAAP  +IDL  S+G+EI IEER A E++      G+  A     V+NPAFDVTP   +T IITEKG+V
Sbjct:  225 VMSQGKIDAVIVGCDRVAANGDVANKIGTLGVSILAKYYNIPFYVAAPTPTIDLKTSTGKEIPIEERDASEVI---NRFGKYSAPKESKVYNPAFDVTPHENVTAIITEKGIV 334          
BLAST of CB250284 vs. ExPASy Swiss-Prot
Match: MTNA_MOOTA (Methylthioribose-1-phosphate isomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.012e-27
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   50 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 388
            +M  G V AVIVGADR+ ANGD ANKIGTY +A+ A+ H I FYVAAP ++ DL+LS G++I IEER   E+  S  GL    A  GI ++NPAFDVTP   +T IITEKGV+
Sbjct:  225 VMARGWVQAVIVGADRITANGDVANKIGTYGVAILAREHGIPFYVAAPASTFDLSLSGGEQIPIEERDPAEV--SHFGL-RPTAPEGIGIFNPAFDVTPYRYVTAIITEKGVI 334          
The following BLAST results are available for this feature:
BLAST of CB250284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_ROSCS1.766e-2750.78Methylthioribose-1-phosphate isomerase OS=Roseifle... [more]
MTNA_HELMI1.766e-2751.56Methylthioribose-1-phosphate isomerase OS=Heliobac... [more]
MTNA_BACCN1.766e-2755.14Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA_ANASP1.766e-2756.76Methylthioribose-1-phosphate isomerase OS=Anabaena... [more]
MTNA_ANASK1.766e-2749.22Methylthioribose-1-phosphate isomerase OS=Anaeromy... [more]
MTNA_XYLFM2.306e-2751.69Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_ENT382.306e-2757.89Methylthioribose-1-phosphate isomerase OS=Enteroba... [more]
MTNA_BACSU2.306e-2755.75Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA1_BACCR2.306e-2755.75Methylthioribose-1-phosphate isomerase 1 OS=Bacill... [more]
MTNA_MOOTA3.012e-2757.52Methylthioribose-1-phosphate isomerase OS=Moorella... [more]

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Properties
Property NameValue
Genbank descriptionEST0060 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ077 similar to cytokinin-induced gene CIG2 (acc# BAB63262), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250284 ID=CB250284; Name=CB250284; organism=Citrus sinensis; type=EST; length=490bp
ACATGATCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCAT
TGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAGATCGAGTG
GCTGCAAATGGTGACACTGCTAACAAGATTGGAACCTACAGCCTTGCATT
ATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGCTGCTCCACTGACGT
CAATTGATTTAACCCTTTCTTCTGGACAAGAGATTGTCATAGAGGAGAGG
TCTGCTAAAGAATTGTTGTGCTCTCGAGGAGGACTTGGTGAACAAGTAGC
TGCATCTGGAATCTCTGTCTGGAATCCGGCTTTTGATGTTACCCCAGCTA
ATTTGATCACTGGAATTATAACAGAAAAGGGTGTCGTTACAAAGGCAGGT
GCTGATGATGCTTTTGACATAAAGGATTTCATACAAAAGACAGTCTGAGG
CTCTGATGCAAAAGAAGGTGATTTTTAACCGGATGAAGTG
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