CB250291
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 3.686e-24 Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 3 Query: 42 LIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 359 L GG++ L + FL +L M+VYVWS+++P + ++F GL TF A +LPW L+GFS+ +G S VDLLG+ GH YYFLEDV+P G+R L+TP F+K L Sbjct: 102 LFGGVLMTLLGLLGSLFFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLL 208
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.212e-24 Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 42 LIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 359 L GG++ L + FL +LT M+VYVWS+++P + ++F GL TF A +LPW L+G + +G S VDLLG+ GH YYFLEDV+P G+R L TPSF+K L Sbjct: 102 LFGGVLMTLLGLLGSLFFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLL 208
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.829e-23 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 3 Query: 42 LIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKALFAD 368 L GG++ L + FL +L M+VYVWS+++P + ++F GL F A +LPW L+GFS+ +G S DLLG++ GH YYFLEDV+P G+R L TPS +K L D Sbjct: 102 LFGGVLMTLLGFLGSLFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLLDD 211
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18 Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 3 Query: 3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFA 365 M++FG+ T+L+ +IP+ F L SL M++Y+WS++ P ++S GL T A YLPW +L V G+ DLLG+IAGH YYFL ++P TG+ LKTP ++ + A Sbjct: 98 MMIFGSF----TLLVLSVIPFFWTPF-----LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVA 209
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 7.444e-17 Identity = 50/134 (37.31%), Postives = 71/134 (52.99%), Query Frame = 3 Query: 3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVR 404 M++FGA L L IP+L I FL + M++YVWS++ P +S GL + YLPW +LG V G+ LLG++ GH YYFL ++P TG+ LKTP ++ + A + V A VR Sbjct: 98 MMIFGAISL----LALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVR 222
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.404e-15 Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPA 422 M++FGA L L+ +IP + F I +S M++YVWS++NP ++ GL + YLPW +L V G+S LLG++ GH YYF ++P TG+ LKTP ++ + A + + + VR PPA Sbjct: 98 MMIFGAISL----LVLSIIPLFNSFFLGIPMVS-----MLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVR---PPA 225
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.335e-15 Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 3 Query: 3 MLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVR 404 M++FGA L L+ +IP L+ + +S M+VYVWS++NP ++ G+ A YLPWV+L V G+ LLG++ GH YY+ ++P TG+ LKTP ++ + A + + A VR Sbjct: 98 MMIFGAISL----LVLSVIPQLNTYVLGLPMVS-----MLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVR 222
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_DICDI (Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 3 Query: 93 FLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWV-LLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPL-KTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQ 437 FL + ++Y++S+ NP +F G F+F YLPWV L+ + G + D L +++GH +++L D+YPR G L KTP FI +F P NVR P + + Sbjct: 117 FLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGVPALIKTPKFITNIFNKGD---RNPNNVRRDPRTGRPIQE 230
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11 Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 3 Query: 87 IIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADE 371 I FL + + ++YVW + N +SF F A YLPWVL GF+ + +L+G++ GHAY+F+ YP G + TP F+ L DE Sbjct: 117 IYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGVDLISTPEFLHRLIPDE 211
BLAST of CB250291 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11 Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 3 Query: 45 IGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRP-LKTPSFIKALFAD 368 IGGMI + FL ++L L + Y+W + N + +SF F A YLPWVL F F+ + L+G+ GH YYF + Y + G P L+TP F+K L D Sbjct: 110 IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFE-FIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPD 210 The following BLAST results are available for this feature:
BLAST of CB250291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250291 ID=CB250291; Name=CB250291; organism=Citrus sinensis; type=EST; length=594bpback to top |