CB250297

Overview
NameCB250297
Unique NameCB250297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2282 contig Csv1_Contig2282:314..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.580e-24
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELLVKDAA-----NSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 263
            TS A T  IPGHYV++WELL +        ++   E L +CCL +EE+L++VYRQGRVAD SIGPLEIR+V+ GTFEE+MD A+SRG SI Q
Sbjct:  311 TSRACTERIPGHYVVYWELLTESPVGAGDGDTVDGETLGRCCLEMEEALSAVYRQGRVADGSIGPLEIRIVRPGTFEEVMDLAVSRGTSIGQ 402          
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.282e-22
Identity = 49/89 (55.06%), Postives = 66/89 (74.16%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELLVKDAANSPS--DEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 263
            TSYADT++IPGHYV+FWEL  + + + P   D+ +  CC  VE+ L+ VYR+ R  D SIGPLEIRVV  GTF+ LMD+ +S+G+S+NQ
Sbjct:  482 TSYADTSSIPGHYVLFWELKPRHSNDPPKLDDKTMEDCCSEVEDCLDYVYRRCRNRDKSIGPLEIRVVSLGTFDSLMDFCVSQGSSLNQ 570          
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 263
            TSYADT+++PGHYV+FWE+           +++ +CC+ VEE L+ +YRQ R  + SIG LEIRVVK GTFE+LMD  IS+G S NQ
Sbjct:  469 TSYADTSSVPGHYVLFWEI-----QGHLEPKLMEECCVAVEEELDYIYRQCRTKERSIGALEIRVVKPGTFEKLMDLIISQGGSFNQ 550          
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.084e-21
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELL-VKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 263
            TSY D +T+PGHYV+FWE+    D   +P D ++L  CC  VEESL+ VYR+ R  D SIGPLEIR+V+ G F+ LMD  +S G+SINQ
Sbjct:  469 TSYTDISTVPGHYVLFWEIKSTHDERPAPLDAQLLESCCAAVEESLDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMDLLVSHGSSINQ 557          
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.291e-18
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELLVKDAANS-PSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPL 185
            TSYA+T TIPGHYVI+WELL +D +N+  S+EV+ +CCL +EESLNSVYRQ RVAD SIGPL
Sbjct:  478 TSYAETKTIPGHYVIYWELLGRDQSNALMSEEVMAKCCLEMEESLNSVYRQSRVADKSIGPL 539          
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELLVKDAANSPSD---EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 263
            T+YAD +T+PGHY++FWEL     +N   D     + +CCL VE+  + +YR+ R    SI  LEIR++ +G F+ LMD+ +SRG S +Q
Sbjct:  492 TAYADISTLPGHYILFWELTNTCDSNVAIDIDQTAMEKCCLAVEDHFDEMYRKIR-HRGSISALEIRILSHGAFDALMDFFVSRGTSASQ 580          
BLAST of CB250297 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    3 TSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ 263
            TS+ + ++ PG YVIFWEL     +   SDEVL+ C   ++ +       G     +IGPLE+R+++ GTF+E++D+ +S G +++Q
Sbjct:  467 TSFVERSSDPGRYVIFWEL-----SGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQ 548          
The following BLAST results are available for this feature:
BLAST of CB250297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GH39_ORYSJ4.580e-2458.70Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH3.282e-2255.06Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH39_ARATH8.084e-2154.02Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH311_ORYSJ8.084e-2155.06Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ARATH1.291e-1870.97Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH37_ORYSJ8.657e-1543.33Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ORYSJ2.607e-1136.78Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionEST0076 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ102 similar to Nt-gh3 protein (acc# AAD32141), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250297 ID=CB250297; Name=CB250297; organism=Citrus sinensis; type=EST; length=263bp
ACACAAGTTATGCTGACACAACGACAATTCCAGGACATTATGTGATATTC
TGGGAGTTGCTTGTTAAAGATGCAGCCAATTCACCAAGTGATGAGGTGCT
GAATCAATGTTGCCTGGTAGTGGAAGAGTCGCTGAACTCGGTGTATCGAC
AAGGCCGAGTTGCTGATAATTCAATTGGACCACTAGAGATAAGGGTGGTG
AAAAATGGGACATTTGAGGAGCTAATGGACTATGCCATTTCACGGGGCGC
GTCAATTAATCAG
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