CB250306

Overview
NameCB250306
Unique NameCB250306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 3.273e-43
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            LNEIKDSVVAGFQWA+KEG L EENMRG+ F+V DV LHADAIHRGGGQ+IPTARR +YA  LTA+PRL+EP+YLVEIQ PEQ +GGIY VLN+KRGHVFEE Q
Sbjct:  672 LNEIKDSVVAGFQWATKEGVLCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYACVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQ 775          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 4.274e-43
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            LNEIKDSVVAGFQWA++EG L++ENMRG+ F V DV LHADAIHRGGGQ+IPTARRV YAS LTA+PRLLEPVYLVEIQ PE A+GGIY VLN++RGHVFEE Q
Sbjct:  666 LNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQ 769          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 168.703 bits (426), Expect = 8.060e-42
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            LNEIKDSVVAGFQWASKEG LA+EN+RG+ F + DV LHADAIHRGGGQ+IPT RR +YA+ +TAKPRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q
Sbjct:  658 LNEIKDSVVAGFQWASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEENQ 761          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.912e-41
Identity = 77/104 (74.04%), Postives = 89/104 (85.58%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            LNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA  LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q
Sbjct:  658 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQ 761          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 7.544e-40
Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320
            LNEIKDSVV+GFQWA++EG + EE MR I F + DV LHADAIHRGGGQ+IPTARRV+YA+ L A+P LLEPV+LVEIQ PEQA+GG+Y VL ++RGHVF E QRP
Sbjct:  657 LNEIKDSVVSGFQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRP 762          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.858e-38
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 317
            LNEIKDSVVA F WASKEG + EEN+R   F + DVVLHADAIHRGGGQ+IPTARRV+YAS L A P + EPV+LVEIQ  E A+GGIYSVLN+KRGHVF E QR
Sbjct:  656 LNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQR 760          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_DICDI (Elongation factor 2 OS=Dictyostelium discoideum GN=efbA PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.222e-38
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 317
            LNEIKDS V  FQWA+KEG + +ENMRGI F + DV LH DAIHRGGGQ+IPTARRV+YA++LTA P LLEP+YLVEI APE A+GGIYSVLN++RG V  E +R
Sbjct:  655 LNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERR 759          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_DEBHA (Elongation factor 2 OS=Debaryomyces hansenii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.332e-36
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320
            LNEIKDSVVA FQWA+KEG +  EN+R +   + DV LHADAIHRGGGQ+IPT RRV YAS L A+P + EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRP
Sbjct:  656 LNEIKDSVVAAFQWATKEGPIFGENVRSVRVNILDVTLHADAIHRGGGQIIPTMRRVTYASMLLAEPAIQEPVFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRP 761          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Pichia guilliermondii GN=EFT2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.739e-36
Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320
            LNEIKDSVVA FQWA+KEG +  EN+R +   + DV LHADAIHRGGGQ+IPT RRV YAS L A+P + EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRP
Sbjct:  656 LNEIKDSVVAAFQWATKEGPIFGENVRSVRVNILDVTLHADAIHRGGGQIIPTMRRVTYASMLLAEPAIQEPVFLVEIQCPENAIGGIYSVLNKKRGQVVSEEQRP 761          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.272e-36
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320
            LNEIKDSVVA FQWA+KEG +  EN R +   + DV LHADAIHRGGGQ+IPT RRV YAS L A+P + EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRP
Sbjct:  656 LNEIKDSVVAAFQWATKEGPIFGENCRSVRVNILDVTLHADAIHRGGGQIIPTMRRVTYASMLLAEPAIQEPVFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRP 761          
The following BLAST results are available for this feature:
BLAST of CB250306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF2_CHICK3.273e-4378.85Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_CAEEL4.274e-4379.81Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_DROME8.060e-4275.96Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_BOMMO8.912e-4174.04Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_NEUCR7.544e-4071.70Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_SCHPO1.858e-3873.33Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_DICDI9.222e-3870.48Elongation factor 2 OS=Dictyostelium discoideum GN... [more]
EF2_DEBHA1.332e-3668.87Elongation factor 2 OS=Debaryomyces hansenii GN=EF... [more]
EF2_PICGU1.739e-3668.87Elongation factor 2 OS=Pichia guilliermondii GN=EF... [more]
EF2_CANAL2.272e-3668.87Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]

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Properties
Property NameValue
Genbank descriptionEST0090 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ125 similar to elongation factor 2 (acc# BAA77028), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250306 ID=CB250306; Name=CB250306; organism=Citrus sinensis; type=EST; length=322bp
ACTTGAATGAAATTAAGGATTCAGTTGTTGCTGGGTTCCAGTGGGCATCA
AAGGAAGGTGCATTGGCTGAAGAAAACATGAGGGGCATTTGCTTTGAAGT
TTGTGATGTGGTTCTTCATGCCGATGCTATCCACAGAGGTGGTGGCCAGG
TTATTCCAACTGCTAGAAGGGTCATTTATGCATCCCAGCTTACAGCCAAA
CCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAAATCCAAGCTCCTGAACA
GGCACTTGGTGGTATTTACAGTGTTCTTAACCAGAAACGTGGTCACGTTT
TTGAGGAGATGCAGAGACCTGG
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