CB250306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.476e-27 Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320 L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ P Sbjct: 759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIP 864
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.927e-27 Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320 L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ P Sbjct: 759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIP 864
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.927e-27 Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320 L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ P Sbjct: 758 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIP 863
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.927e-27 Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320 L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ P Sbjct: 759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIP 864
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.927e-27 Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRP 320 L +KDS+V GFQW ++EG L +E +R + F++ D V+ + +HRGGGQ+IPTARRV+Y++ L A PRL+EP Y VE+QAP + +Y+VL ++RGHV ++ P Sbjct: 759 LGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIP 864
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_BLAHO (Elongation factor 2 OS=Blastocystis hominis PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26 Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEM 311 LNEIK+SVVAGF A G + +E R + ++ DV LHAD+IHRG GQ++P ARRV+ + L A+P L+EPV+L EIQ P GGIY VL ++RGHVFEE+ Sbjct: 680 LNEIKESVVAGFGAACAAGPIVDEPCRNVLCKLMDVTLHADSIHRGMGQIMPPARRVVLGTMLKAEPILVEPVFLCEIQVPRAVSGGIYGVLTRRRGHVFEEI 782
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.432e-22 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 317 L E+KD+++ GF+ A +EG LA E +RG+ + D ++H D HRG GQ+ P R IYA LTAKP LLEP+ ++I+AP + LG I +++ +KRG + + +Q+ Sbjct: 559 LREVKDTIIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKILQVLQQ 663
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.981e-20 Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314 L EIKD+V+ GF+ A KEG LA E +RG+ + D V+H D HRG Q+ P R I+A LTAKP +LEP+ ++I+ P + +G I +V+ +KRG + E Q Sbjct: 557 LREIKDTVIQGFRLAMKEGPLAMEPVRGVKVVLHDAVVHEDPAHRGPAQIFPAVRNAIFAGFLTAKPTILEPILKLDIRTPMEYIGNISTVITKKRGKLIEVQQ 660
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.640e-20 Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314 L E+KD+++ GF+ A +EG LA E +RG+ + D V+H D HRG Q+ P R I+A LTA+P +LEP+ ++I++P + +G I SV+ +KRG + E Q Sbjct: 559 LREVKDTIIQGFRLAMREGPLAMEPVRGVKVVLHDAVIHEDPAHRGPAQIFPAVRNAIFAGFLTARPTILEPILKLDIRSPMEYIGNISSVITKKRGKLIEVQQ 662
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.479e-19 Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 3 Query: 3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 317 L EI+D +V GF+WA++ G LA+E +RG+ + D V+H D HRG Q++P + I+A+ L+AKP +LEP+ ++I+ +G + SVLN+ RG + + Q+ Sbjct: 562 LREIRDYIVQGFRWATEAGPLAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAMLSAKPTVLEPLLRLDIKVAPDYIGAVTSVLNKHRGKILDMTQQ 666 The following BLAST results are available for this feature:
BLAST of CB250306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250306 ID=CB250306; Name=CB250306; organism=Citrus sinensis; type=EST; length=322bpback to top |