CB250306

Overview
NameCB250306
Unique NameCB250306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_ARCFU (Elongation factor 2 OS=Archaeoglobus fulgidus GN=fusA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.210e-15
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 305
            LNE  + ++ GF+ A + G +A E   GI  ++ D  LH DA+HRG  QVIP  R  I+A+ L AKP LLEP   + I  P+  +G +   +  +RG + E
Sbjct:  551 LNETMELILEGFREAMRAGPIAREPCMGIKVKLVDCKLHEDAVHRGPAQVIPAVRSAIFAAILQAKPALLEPYQKIFITVPQDMMGAVTREIQGRRGQILE 651          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 305
            L+EIK+ ++ GF+ A  +G LA E   GI   + D  +H DA+HRG  QV+P  R+ +Y + + A+P L+EP+  V I  P+  +G     +  +RG + E
Sbjct:  554 LDEIKELLMEGFESALDDGPLANEKAMGIKISLMDAKIHEDAVHRGPAQVLPAIRKAVYGAIMLAQPTLMEPMQKVYISVPQDYMGAATREVQNRRGQIVE 654          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.431e-15
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRG 293
            L E  + ++ GF+ A   G +  E ++GI  ++ DV LH DA+HRG  QVIP  R+ + A  L A P LLEP+  V IQ P+  +GG  S +  +RG
Sbjct:  553 LRETMELILEGFEEAITAGPICREPVQGIKAKLVDVKLHEDAVHRGPAQVIPAVRQAVQAGILMANPTLLEPMQYVFIQVPQDQMGGAMSEIQGRRG 649          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.097e-14
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            L+EIK+ ++ GF+ A   G +A+E + G+  ++ D  +H DA+HRG  QV+P  R+ I+ + ++A+P LLEP+  V I  P+  +G     +  +RG +    Q
Sbjct:  554 LDEIKELLMDGFESAMDNGPVAKEKVMGVKIKLMDAKIHEDAVHRGPAQVLPAIRKGIFGAMMSAEPVLLEPIQKVFINVPQDYMGSATREIQNRRGQIVNMTQ 657          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_METMJ (Elongation factor 2 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=fusA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.444e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 305
            LNE  + V+ G++ A + G LA+E ++ +   + DV LH DAIHRG  QVIP  R  + A  L A   LLEP+  ++I  P + +G   S +  +RG VF+
Sbjct:  554 LNETMELVLDGWREALRGGPLADELVQNLKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGVLMAGDSLLEPIQKIQITVPSEQMGAATSQIQGRRGQVFD 654          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.169e-14
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 305
            LNE  + ++ GF    K G L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +
Sbjct:  553 LNETMELIIEGFTEVMKAGPLSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQVPQEQMGGATKEIQGRRGVIID 653          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.111e-14
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 305
            LNE  + V+ GF    K G L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +
Sbjct:  553 LNETMELVLEGFVEVMKAGPLSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQTPQEQMGGATKEIQGRRGIIID 653          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.213e-13
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            LNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG + +  Q
Sbjct:  554 LNEVMDLLVDGFHMAMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSRELNQRRGQLIDMRQ 657          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.213e-13
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQ 314
            LNE+ D +V GF  A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG + +  Q
Sbjct:  554 LNEVMDLLVDGFHQAMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRSAIHCAMMKAGPVLYEPYQKVIINVPYEYMGAVSRELNQRRGQLIDMRQ 657          
BLAST of CB250306 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.213e-13
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 3
Query:    3 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 317
            L+E  + ++  F  A  +G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   A   LLEP+  V I  P++ +G + + L Q+RG V E+MQ+
Sbjct:  555 LDETMELLIESFNEAMDKGPLANEKVYGLKVSLMDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAGRVLLEPMQKVFISVPQEIMGSVTNELQQRRG-VVEDMQQ 658          
The following BLAST results are available for this feature:
BLAST of CB250306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF2_ARCFU2.210e-1539.60Elongation factor 2 OS=Archaeoglobus fulgidus GN=f... [more]
EF2_METST3.770e-1536.63Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_METTP6.431e-1541.24Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_METTH1.097e-1434.62Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_METMJ2.444e-1439.60Elongation factor 2 OS=Methanoculleus marisnigri (... [more]
EF2_METBU4.169e-1437.62Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_METMT7.111e-1438.61Elongation factor 2 OS=Methanococcoides methyluten... [more]
EF2_THEGJ1.213e-1336.54Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_PYRKO1.213e-1336.54Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_PICTO1.213e-1339.05Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]

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Properties
Property NameValue
Genbank descriptionEST0090 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ125 similar to elongation factor 2 (acc# BAA77028), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250306 ID=CB250306; Name=CB250306; organism=Citrus sinensis; type=EST; length=322bp
ACTTGAATGAAATTAAGGATTCAGTTGTTGCTGGGTTCCAGTGGGCATCA
AAGGAAGGTGCATTGGCTGAAGAAAACATGAGGGGCATTTGCTTTGAAGT
TTGTGATGTGGTTCTTCATGCCGATGCTATCCACAGAGGTGGTGGCCAGG
TTATTCCAACTGCTAGAAGGGTCATTTATGCATCCCAGCTTACAGCCAAA
CCAAGGCTTCTTGAGCCTGTCTACTTGGTGGAAATCCAAGCTCCTGAACA
GGCACTTGGTGGTATTTACAGTGTTCTTAACCAGAAACGTGGTCACGTTT
TTGAGGAGATGCAGAGACCTGG
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