CB250319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.943e-48 Identity = 92/208 (44.23%), Postives = 127/208 (61.06%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCANADGSASGFILPNSC 628 +K+ A +SPNTDGIH+ S GV I+ S I TGDDC+S+G G N+ I+ + CGPGHGISIGSLGK Q E V+ + +++ T T T NG RIK+W G I F+ MNNV +PI+IDQ YCP N + S VK+S++ +++I GTSA +K CS +PC + L D+ + + +PA + C N SG + P C Sbjct: 188 LKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPATSQCLNVKPITSGKLNPIPC 395
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48 Identity = 93/211 (44.08%), Postives = 131/211 (62.09%), Query Frame = 2 Query: 5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQP--AEASCANADGSASGFILPNSCL 631 G+KV A SPNTDGIH+ S G+ I ++ + TGDDC+S+ +T + I N+ CGPGHGISIGSLGK + V+++TV + + T NGVRIK+W + +G I+F++ MNNV NPIIIDQ YC C Q S + I ++ + + GTSA++ +K+ CS +PC I L+D+ L N E+ C A GS+SG + P CL Sbjct: 215 GLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTW-QGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCL 424
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCANADGSASGFILPNSC 628 +K+ A +SPNTDGIH+ S GV I+ S I TGDDC+S+G G N+ I+ + CGPGHGISIGSLGK Q E V+ + +++ T T T NG RIK+W G I F+ MNNV +PI+IDQ YCP N + S VK+S++ +++I GTSA +K CS +PC + L D+ + + +PA + C N G + P C Sbjct: 188 LKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPATSQCLNVKPITIGKLNPIPC 395
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47 Identity = 97/207 (46.86%), Postives = 133/207 (64.25%), Query Frame = 2 Query: 2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL-IYKNQPAEASCANADGSASGFILP 619 QG+K+ A DSPNTDGI + AS I IGTGDDC+++G G++N+ I+++ CGPGHGISIGSLG++ A V +V V F TQNG+RIK+W + +G A I +++ M N +NPI+I+Q YC + C Q S V+I V Y++IHGTSAT ++L CS PCTGI L +V L + +PA NA G SG ++P Sbjct: 220 QGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTW-QGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLIP 425
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47 Identity = 93/202 (46.04%), Postives = 124/202 (61.39%), Query Frame = 2 Query: 5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSW-GRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGSASG 607 G ++A GDSPNTDGIH+ S+ V IL++ IGTGDDCVS+G G+ + ++ V CGPGHG+S+GSLGK E V+ +TV + T T T NGVRIK+W P +I F+ M NV NP+IIDQ Y P N S +K+S + ++++ GTS T GV L CSS PC G+ L +V L + P A C N +G Sbjct: 185 GFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNVKPLVTG 386
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47 Identity = 94/206 (45.63%), Postives = 132/206 (64.08%), Query Frame = 2 Query: 5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL-IYKNQPAEASCANADGSASGFILP 619 G+ ++A DSPNTDGI + AS + + IGTGDDCV++G G++N+ IE++ CGPGHGISIGSLG+E A V V V F TQNG+RIK+W + +G A +I++++ M N +NPI+I+Q YC + C Q S V+I DV Y++I GTSAT ++L CS PC I L D+ L + + A NA+G SG ++P Sbjct: 221 GISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTW-QGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGYFSGHVIP 425
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.657e-46 Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 2 Query: 14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCP-DNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGSASGFILP 619 V+A DSPNTDGIHV + +TI S IGTGDDC+S+ G+ + ++ CGPGHGISIGSLG++ E V V V +GT NG+RIK+W + +G A NI+FQ+ MN+V NPIIIDQNYC +C Q S V++ +V+YQ+I GTSA+ + L+CS PC GI L+ V+L Q A C N + G + P Sbjct: 261 VTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTW-KGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL----QNGRAECNNVQPAYKGVVSP 458
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.164e-46 Identity = 92/192 (47.92%), Postives = 124/192 (64.58%), Query Frame = 2 Query: 14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK-NQPAEASCAN 586 V+A SPNTDGIH+ + + +++S IGTGDDC+S+ G+ + N+ CGPGHGISIGSLG EA V V V T NG+RIK+W + +G A+NI FQ+ +M+NV NPIIIDQ YC + CP Q S VK+S+V Y +I GTSA+EV VK DCS +PC G + ++ L+ + SC+N Sbjct: 247 VTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTW-QGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSCSN 437
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.826e-46 Identity = 100/207 (48.31%), Postives = 121/207 (58.45%), Query Frame = 2 Query: 14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIY--KNQPAEASCANADGSASGFILPNSC 628 VSA +SPNTDGIHV SS V I DS TGDDC+SVG L+I V CGPGHGIS+GSLG E V V V + TFT T NGVRIK+W G ++ F+ ++ NV NP++IDQ YCP N S VKIS V +Q+I GTS T+ V L S PC GI + D+ + Y K PA++SC N S G P C Sbjct: 182 VSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVC 388
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.295e-46 Identity = 97/210 (46.19%), Postives = 132/210 (62.86%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGF-ARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK--NQPAEASCANADGSASGFILPNSC 628 V V+A GDSPNTDGIH+ SSGVTI ++ IG GDDC+S+GPG + + I V CGPGHGISIGSLG+ + E V ++ V T T NGVRIK++ ++ A I +++ M + PIIID YCP+ AS V + DV +++I GTS+T V L C++K PCTG++++DV + Y N A C NA GSA G + +C Sbjct: 200 VNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNAKGSAKGCLKELAC 409 The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bpback to top |