CB250319

Overview
NameCB250319
Unique NameCB250319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.943e-48
Identity = 92/208 (44.23%), Postives = 127/208 (61.06%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCANADGSASGFILPNSC 628
            +K+ A  +SPNTDGIH+  S GV I+ S I TGDDC+S+G G  N+ I+ + CGPGHGISIGSLGK Q E  V+ + +++ T T T NG RIK+W     G    I F+   MNNV +PI+IDQ YCP N     + S VK+S++ +++I GTSA    +K  CS  +PC  + L D+ + +   +PA + C N     SG + P  C
Sbjct:  188 LKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAEPATSQCLNVKPITSGKLNPIPC 395          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.150e-48
Identity = 93/211 (44.08%), Postives = 131/211 (62.09%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQP--AEASCANADGSASGFILPNSCL 631
            G+KV A   SPNTDGIH+  S G+ I ++ + TGDDC+S+   +T + I N+ CGPGHGISIGSLGK +    V+++TV +   + T NGVRIK+W +  +G    I+F++  MNNV NPIIIDQ YC     C  Q S + I ++ +  + GTSA++  +K+ CS  +PC  I L+D+ L   N     E+ C  A GS+SG + P  CL
Sbjct:  215 GLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTW-QGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCL 424          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCANADGSASGFILPNSC 628
            +K+ A  +SPNTDGIH+  S GV I+ S I TGDDC+S+G G  N+ I+ + CGPGHGISIGSLGK Q E  V+ + +++ T T T NG RIK+W     G    I F+   MNNV +PI+IDQ YCP N     + S VK+S++ +++I GTSA    +K  CS  +PC  + L D+ + +   +PA + C N      G + P  C
Sbjct:  188 LKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPATSQCLNVKPITIGKLNPIPC 395          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.957e-47
Identity = 97/207 (46.86%), Postives = 133/207 (64.25%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL-IYKNQPAEASCANADGSASGFILP 619
            QG+K+ A  DSPNTDGI + AS    I    IGTGDDC+++G G++N+ I+++ CGPGHGISIGSLG++   A V +V V    F  TQNG+RIK+W +  +G A  I +++  M N +NPI+I+Q YC   + C  Q S V+I  V Y++IHGTSAT   ++L CS   PCTGI L +V L +   +PA     NA G  SG ++P
Sbjct:  220 QGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTW-QGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARGFYSGRLIP 425          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.359e-47
Identity = 93/202 (46.04%), Postives = 124/202 (61.39%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSW-GRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGSASG 607
            G  ++A GDSPNTDGIH+  S+ V IL++ IGTGDDCVS+G G+  + ++ V CGPGHG+S+GSLGK   E  V+ +TV + T T T NGVRIK+W   P      +I F+   M NV NP+IIDQ Y P N       S +K+S + ++++ GTS T  GV L CSS  PC G+ L +V L +   P  A C N     +G
Sbjct:  185 GFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNVKPLVTG 386          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.694e-47
Identity = 94/206 (45.63%), Postives = 132/206 (64.08%), Query Frame = 2
Query:    5 GVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL-IYKNQPAEASCANADGSASGFILP 619
            G+ ++A  DSPNTDGI + AS    +  + IGTGDDCV++G G++N+ IE++ CGPGHGISIGSLG+E   A V  V V    F  TQNG+RIK+W +  +G A +I++++  M N +NPI+I+Q YC   + C  Q S V+I DV Y++I GTSAT   ++L CS   PC  I L D+ L +   + A     NA+G  SG ++P
Sbjct:  221 GISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTW-QGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGYFSGHVIP 425          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.657e-46
Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCP-DNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGSASGFILP 619
            V+A  DSPNTDGIHV  +  +TI  S IGTGDDC+S+  G+  +   ++ CGPGHGISIGSLG++  E  V  V V     +GT NG+RIK+W +  +G A NI+FQ+  MN+V NPIIIDQNYC     +C  Q S V++ +V+YQ+I GTSA+   + L+CS   PC GI L+ V+L    Q   A C N   +  G + P
Sbjct:  261 VTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTW-KGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITLNCSQSVPCQGIVLQSVQL----QNGRAECNNVQPAYKGVVSP 458          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.164e-46
Identity = 92/192 (47.92%), Postives = 124/192 (64.58%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK-NQPAEASCAN 586
            V+A   SPNTDGIH+  +  + +++S IGTGDDC+S+  G+  +   N+ CGPGHGISIGSLG    EA V  V V       T NG+RIK+W +  +G A+NI FQ+ +M+NV NPIIIDQ YC   + CP Q S VK+S+V Y +I GTSA+EV VK DCS  +PC G  + ++ L+    +    SC+N
Sbjct:  247 VTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTW-QGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSCSN 437          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.826e-46
Identity = 100/207 (48.31%), Postives = 121/207 (58.45%), Query Frame = 2
Query:   14 VSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIY--KNQPAEASCANADGSASGFILPNSC 628
            VSA  +SPNTDGIHV  SS V I DS   TGDDC+SVG     L+I  V CGPGHGIS+GSLG    E  V  V V + TFT T NGVRIK+W     G   ++ F+  ++ NV NP++IDQ YCP N       S VKIS V +Q+I GTS T+  V L  S   PC GI + D+ + Y  K  PA++SC N   S  G   P  C
Sbjct:  182 VSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIKPSLKGKQNPPVC 388          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.295e-46
Identity = 97/210 (46.19%), Postives = 132/210 (62.86%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGF-ARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK--NQPAEASCANADGSASGFILPNSC 628
            V V+A GDSPNTDGIH+  SSGVTI ++ IG GDDC+S+GPG + + I  V CGPGHGISIGSLG+ + E  V ++ V   T   T NGVRIK++   ++   A  I +++  M +   PIIID  YCP+       AS V + DV +++I GTS+T   V L C++K PCTG++++DV + Y   N    A C NA GSA G +   +C
Sbjct:  200 VNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNAKGSAKGCLKELAC 409          
The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PGLR_GOSHI3.943e-4844.23Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]
PGLR5_ARATH5.150e-4844.08Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_GOSBA1.957e-4743.75Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]
PGLR2_CHAOB1.957e-4746.86Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_MEDSA4.359e-4746.04Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR2_CRYJA5.694e-4745.63Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR_MALDO1.657e-4647.29Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
PGLR_PERAE2.164e-4647.92Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR_TOBAC2.826e-4648.31Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR3_MAIZE6.295e-4646.19Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionEST0106 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ154 similar to polygalacturonase (acc# AAC64184), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTGG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGACC
AAGCAATGGATTTGCCAGGAACATTCTTTTCCAACACGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACAAC
AATTGCCCTGGACAGGCTTCAGGGGTTAAAATCAGTGATGTGATATATCA
AGACATTCATGGAACTTCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCGAAGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCATT
TACAAGAATCAACCAGCTGAAGCTTCCTGCGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGTTATGAAA
AGTATTTGAGTTGGAAAAAAAAGGCATAGGAAGCCGATCATGATTATATA
GTTAGTAG
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