CB250319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45 Identity = 92/211 (43.60%), Postives = 126/211 (59.72%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSW-GRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIY--KNQPAEASCANADGSASGFILPNSCL 631 +K+ A +SPNTDGIH+ GV IL++KI TGDDC+SVG G NL IE V CGPGHGIS+GSLG+ E V ++TV + T GT NG+RIK+W A I F+ ++N V NPI+IDQ YCP N + S +K+ D+ +++I GTS + VKL CS +PC + + D+ + Y + P C N G P +C+ Sbjct: 177 IKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQNPKACV 387
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.454e-44 Identity = 93/210 (44.29%), Postives = 129/210 (61.43%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGF-ARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK--NQPAEASCANADGSASGFILPNSC 628 V V+A GDSPNTDGIH+ SSG+TI ++ IG GDDC+S+GPG + + I V CGPGHGISIGSLG+ + E V ++ V T T GVRIK++ ++ I +++ M + NPI ID YCP+ AS V + DV +++I GTS+T V L C++K PCTG++++DV + Y N A C NA GS G + +C Sbjct: 200 VTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNVEYSGTNNKTMAICTNAKGSTKGCLKELAC 409
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.892e-44 Identity = 88/184 (47.83%), Postives = 122/184 (66.30%), Query Frame = 2 Query: 2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIY 553 Q +K++A +SPNTDGIH+ + V+ILDS I TGDDCVSVG G+ N+ +E V CGPGHG+S+GSLGK + E V + V + T T NG+RIK+WG A +I F++ +M +V NPIIIDQNY G S V ISD+++++I GT+ T+ V++ CS PC G+++ DV L Y Sbjct: 206 QNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNY-----GSRGGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDY 384
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44 Identity = 91/199 (45.73%), Postives = 126/199 (63.32%), Query Frame = 2 Query: 2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGS 598 QG+K+ A DSPNTDGI + AS I IGTGDDCV+VG G++N+ I+++ CGPGHG+SIGSLGK + V V + F TQNG+RIK+W + +G A +I +++ M N +NPI+I+Q YC C Q S VKI DV +++IHGTSAT ++L CS PC+ I L +V L + A+C N + + Sbjct: 221 QGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTW-QGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTSGKV-ATCVNKNAN 417
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.313e-43 Identity = 92/210 (43.81%), Postives = 128/210 (60.95%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGF-ARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK--NQPAEASCANADGSASGFILPNSC 628 V V+A GDSPNTDGIH+ SSG+TI ++ IG GDDC+S+GPG + + I V CGPGHGISIGSLG+ + E V ++ V T T GVRIK++ ++ I +++ M + NPI ID YCP+ AS V + DV +++I GTS+T + L C++K PCTG +++DV + Y N A C NA GS G + +C Sbjct: 200 VTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAISLLCTAKVPCTGATMDDVNVEYSGTNNKTMAICTNAKGSTKGCLKELAC 409
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.924e-43 Identity = 95/215 (44.19%), Postives = 135/215 (62.79%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNY-CPDNNNCPG-QASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL----IYKNQPAEASCANADGSASGFILPNSCLK 634 ++++A SPNTDGI V ASS V I D I TGDDC+++ G +N+ I + CGPGHGISIGSLGK+ + A V+NV V + F GT NG RIK+W + +G+AR I F ++NV+NPIIIDQ Y D++N ++S V++S V++ + GTS +E GV CS + PCT I L D+K+ Q A+ C N G+++ + CL+ Sbjct: 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTW-QGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.931e-35 Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = 2 Query: 8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPA--EASCANADGSASGFILP 619 +++S+ SPNTDGIH+ + V I +S + GDDC+S+G G +++ I+ V CGP HGISIGSLG +A V N+TV + + NG+R+K+W + G N+LF++ M NV N II+DQ YC + +C + S VK+ DV Y++I GT + CS CT I++ +V+L+ + + C NA G +P Sbjct: 249 IQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTW-QGGTGSVSNLLFENIQMENVLNCIIVDQYYC-QSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELLPEEGELVDDPFCWNAYGKQETLTIP 453
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLRX_COCCA (Exopolygalacturonase OS=Cochliobolus carbonum GN=PGX1 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24 Identity = 68/206 (33.01%), Postives = 106/206 (51.46%), Query Frame = 2 Query: 38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAG-VQNVTVTSVTFTGTQNGVRIKSW------------GRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDN-NNCPGQASGVKISDVIYQDIHGTSATEVGVKLD---CSSKNPCTGISLEDVKLIYKNQPAEASCANADGSAS 604 NTDG S + I +S I GDDCVS P +TN+ ++N+ C HGIS+GSLG+ E V+N+ V +++ + +G RIK W G +G RN+ + ++ NVD I I Q Y N C S + ISD+ ++ GT++ + ++ CSS C+ IS+E++ + + +CANA+G S Sbjct: 227 NTDGWDTYRSDNIIIQNSNINNGDDCVSFKPNSTNILVQNLVCNGSHGISVGSLGQYPGEVDIVENILVRNISMSNASDGARIKVWPGASSALSGDLQGGGGSGAVRNVTYDGMIVKNVDYAIEITQCYGQKNLTLCNQFPSNLTISDITIKNFKGTTSKKYDPRVGYVVCSSPKVCSDISIENIDVKSPSGTNLFTCANAEGIQS 432
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLRX_ASPTU (Exopolygalacturonase OS=Aspergillus tubingensis GN=pgaX PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22 Identity = 71/208 (34.13%), Postives = 107/208 (51.44%), Query Frame = 2 Query: 29 DSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAG-VQNVTVTSVTFTGTQNGVRIKSW-GRPS-----------NGFARNILFQHALMNNVDNPIIIDQNYCPDNNN-CPGQASGVKISDVIYQDIHGTSATE----VGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGS 598 ++ NTDG S+ + I +S I GDDCVS P +TN+ ++N+ C HGIS+GSLG+ + E V+NV V +++ + RIK W G PS +G +NI + AL++NVD I I Q Y N C S + ISDV ++ GT++ VG + CSS + C+ I ++ + + + C N D S Sbjct: 218 EAKNTDGWDTYRSNNIVIQNSVINNGDDCVSFKPNSTNILVQNLHCNGSHGISVGSLGQYKDEVDIVENVYVYNISMFNASDMARIKVWPGTPSALSADLQGGGGSGSVKNITYDTALIDNVDWAIEITQCYGQKNTTLCNEYPSSLTISDVHIKNFRGTTSGSEDPYVGT-IVCSSPDTCSDIYTSNINVTSPDGTNDFVCDNVDES 424
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_COCCA (Polygalacturonase OS=Cochliobolus carbonum GN=PGN1 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17 Identity = 68/201 (33.83%), Postives = 110/201 (54.73%), Query Frame = 2 Query: 17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGT---SATEVGV---KLDCSSKNPCTGISLEDVKLIYK--NQPAEASC 580 ++AGDS NTD + +SSG+TI ++ I DDCV++ G +++ + N C GHG+SIGS+G + V+ V V+ T + NGVRIK+ + G +I +++ + N+ I+I+Q+Y N G+ +GV I+ V +++ G+ S TE+ V K CS N +G+S+ K N P+ ASC Sbjct: 170 NSAGDSAGAHNTDAFDIGSSSGITISNANIKNQDDCVAINSG-SDIHVTNCQCSGGHGVSIGSVGGRKDNT-VKGVVVSGTTIANSDNGVRIKTIS-GATGSVSDITYENITLKNIAKYGIVIEQDYL--NGGPTGKPTTGVPITGVTLKNVAGSVTGSGTEIYVLCGKGSCSGWN-WSGVSITGGKKSSSCLNVPSGASC 364 The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bpback to top |