CB250319

Overview
NameCB250319
Unique NameCB250319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.832e-45
Identity = 92/211 (43.60%), Postives = 126/211 (59.72%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSW-GRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIY--KNQPAEASCANADGSASGFILPNSCL 631
            +K+ A  +SPNTDGIH+    GV IL++KI TGDDC+SVG G  NL IE V CGPGHGIS+GSLG+   E  V ++TV + T  GT NG+RIK+W        A  I F+  ++N V NPI+IDQ YCP N     + S +K+ D+ +++I GTS  +  VKL CS  +PC  + + D+ + Y   + P    C N      G   P +C+
Sbjct:  177 IKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQNPKACV 387          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.454e-44
Identity = 93/210 (44.29%), Postives = 129/210 (61.43%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGF-ARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK--NQPAEASCANADGSASGFILPNSC 628
            V V+A GDSPNTDGIH+  SSG+TI ++ IG GDDC+S+GPG + + I  V CGPGHGISIGSLG+ + E  V ++ V   T   T  GVRIK++   ++      I +++  M +  NPI ID  YCP+       AS V + DV +++I GTS+T   V L C++K PCTG++++DV + Y   N    A C NA GS  G +   +C
Sbjct:  200 VTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNVEYSGTNNKTMAICTNAKGSTKGCLKELAC 409          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.892e-44
Identity = 88/184 (47.83%), Postives = 122/184 (66.30%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIY 553
            Q +K++A  +SPNTDGIH+  +  V+ILDS I TGDDCVSVG G+ N+ +E V CGPGHG+S+GSLGK + E  V  + V + T   T NG+RIK+WG      A +I F++ +M +V NPIIIDQNY        G  S V ISD+++++I GT+ T+  V++ CS   PC G+++ DV L Y
Sbjct:  206 QNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNY-----GSRGGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDY 384          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44
Identity = 91/199 (45.73%), Postives = 126/199 (63.32%), Query Frame = 2
Query:    2 QGVKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGS 598
            QG+K+ A  DSPNTDGI + AS    I    IGTGDDCV+VG G++N+ I+++ CGPGHG+SIGSLGK    + V  V +    F  TQNG+RIK+W +  +G A +I +++  M N +NPI+I+Q YC     C  Q S VKI DV +++IHGTSAT   ++L CS   PC+ I L +V L   +    A+C N + +
Sbjct:  221 QGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTW-QGGSGLASHITYENVEMINAENPILINQFYCTSAAACKNQRSAVKIQDVTFKNIHGTSATTAAIQLMCSDSVPCSNIKLSNVFLKLTSGKV-ATCVNKNAN 417          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.313e-43
Identity = 92/210 (43.81%), Postives = 128/210 (60.95%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGF-ARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYK--NQPAEASCANADGSASGFILPNSC 628
            V V+A GDSPNTDGIH+  SSG+TI ++ IG GDDC+S+GPG + + I  V CGPGHGISIGSLG+ + E  V ++ V   T   T  GVRIK++   ++      I +++  M +  NPI ID  YCP+       AS V + DV +++I GTS+T   + L C++K PCTG +++DV + Y   N    A C NA GS  G +   +C
Sbjct:  200 VTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAISLLCTAKVPCTGATMDDVNVEYSGTNNKTMAICTNAKGSTKGCLKELAC 409          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.924e-43
Identity = 95/215 (44.19%), Postives = 135/215 (62.79%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNY-CPDNNNCPG-QASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL----IYKNQPAEASCANADGSASGFILPNSCLK 634
            ++++A   SPNTDGI V ASS V I D  I TGDDC+++  G +N+ I  + CGPGHGISIGSLGK+ + A V+NV V +  F GT NG RIK+W +  +G+AR I F    ++NV+NPIIIDQ Y   D++N    ++S V++S V++ +  GTS +E GV   CS + PCT I L D+K+        Q A+  C N  G+++  +    CL+
Sbjct:  177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTW-QGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.931e-35
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = 2
Query:    8 VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDNNNCPGQASGVKISDVIYQDIHGT-SATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPA--EASCANADGSASGFILP 619
            +++S+   SPNTDGIH+  +  V I +S +  GDDC+S+G G +++ I+ V CGP HGISIGSLG    +A V N+TV +     + NG+R+K+W +   G   N+LF++  M NV N II+DQ YC  + +C  + S VK+ DV Y++I GT       +   CS    CT I++ +V+L+ +      +  C NA G      +P
Sbjct:  249 IQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTW-QGGTGSVSNLLFENIQMENVLNCIIVDQYYC-QSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELLPEEGELVDDPFCWNAYGKQETLTIP 453          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLRX_COCCA (Exopolygalacturonase OS=Cochliobolus carbonum GN=PGX1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 68/206 (33.01%), Postives = 106/206 (51.46%), Query Frame = 2
Query:   38 NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAG-VQNVTVTSVTFTGTQNGVRIKSW------------GRPSNGFARNILFQHALMNNVDNPIIIDQNYCPDN-NNCPGQASGVKISDVIYQDIHGTSATEVGVKLD---CSSKNPCTGISLEDVKLIYKNQPAEASCANADGSAS 604
            NTDG     S  + I +S I  GDDCVS  P +TN+ ++N+ C   HGIS+GSLG+   E   V+N+ V +++ +   +G RIK W            G   +G  RN+ +   ++ NVD  I I Q Y   N   C    S + ISD+  ++  GT++ +   ++    CSS   C+ IS+E++ +   +     +CANA+G  S
Sbjct:  227 NTDGWDTYRSDNIIIQNSNINNGDDCVSFKPNSTNILVQNLVCNGSHGISVGSLGQYPGEVDIVENILVRNISMSNASDGARIKVWPGASSALSGDLQGGGGSGAVRNVTYDGMIVKNVDYAIEITQCYGQKNLTLCNQFPSNLTISDITIKNFKGTTSKKYDPRVGYVVCSSPKVCSDISIENIDVKSPSGTNLFTCANAEGIQS 432          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLRX_ASPTU (Exopolygalacturonase OS=Aspergillus tubingensis GN=pgaX PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 71/208 (34.13%), Postives = 107/208 (51.44%), Query Frame = 2
Query:   29 DSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAG-VQNVTVTSVTFTGTQNGVRIKSW-GRPS-----------NGFARNILFQHALMNNVDNPIIIDQNYCPDNNN-CPGQASGVKISDVIYQDIHGTSATE----VGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCANADGS 598
            ++ NTDG     S+ + I +S I  GDDCVS  P +TN+ ++N+ C   HGIS+GSLG+ + E   V+NV V +++     +  RIK W G PS           +G  +NI +  AL++NVD  I I Q Y   N   C    S + ISDV  ++  GT++      VG  + CSS + C+ I   ++ +   +   +  C N D S
Sbjct:  218 EAKNTDGWDTYRSNNIVIQNSVINNGDDCVSFKPNSTNILVQNLHCNGSHGISVGSLGQYKDEVDIVENVYVYNISMFNASDMARIKVWPGTPSALSADLQGGGGSGSVKNITYDTALIDNVDWAIEITQCYGQKNTTLCNEYPSSLTISDVHIKNFRGTTSGSEDPYVGT-IVCSSPDTCSDIYTSNINVTSPDGTNDFVCDNVDES 424          
BLAST of CB250319 vs. ExPASy Swiss-Prot
Match: PGLR_COCCA (Polygalacturonase OS=Cochliobolus carbonum GN=PGN1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 68/201 (33.83%), Postives = 110/201 (54.73%), Query Frame = 2
Query:   17 SAAGDSP---NTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRPSNGFARNILFQHALMNNVDN-PIIIDQNYCPDNNNCPGQ-ASGVKISDVIYQDIHGT---SATEVGV---KLDCSSKNPCTGISLEDVKLIYK--NQPAEASC 580
            ++AGDS    NTD   + +SSG+TI ++ I   DDCV++  G +++ + N  C  GHG+SIGS+G  +    V+ V V+  T   + NGVRIK+    + G   +I +++  + N+    I+I+Q+Y   N    G+  +GV I+ V  +++ G+   S TE+ V   K  CS  N  +G+S+   K      N P+ ASC
Sbjct:  170 NSAGDSAGAHNTDAFDIGSSSGITISNANIKNQDDCVAINSG-SDIHVTNCQCSGGHGVSIGSVGGRKDNT-VKGVVVSGTTIANSDNGVRIKTIS-GATGSVSDITYENITLKNIAKYGIVIEQDYL--NGGPTGKPTTGVPITGVTLKNVAGSVTGSGTEIYVLCGKGSCSGWN-WSGVSITGGKKSSSCLNVPSGASC 364          
The following BLAST results are available for this feature:
BLAST of CB250319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PGLR_BRANA1.832e-4543.60Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR1_MAIZE3.454e-4444.29Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR1_ARATH5.892e-4447.83Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR2_JUNAS7.695e-4445.73Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR2_MAIZE1.313e-4343.81Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR3_ARATH2.924e-4344.19Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR4_ARATH2.931e-3538.16Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLRX_COCCA2.328e-2433.01Exopolygalacturonase OS=Cochliobolus carbonum GN=P... [more]
PGLRX_ASPTU3.716e-2234.13Exopolygalacturonase OS=Aspergillus tubingensis GN... [more]
PGLR_COCCA6.140e-1733.83Polygalacturonase OS=Cochliobolus carbonum GN=PGN1... [more]

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Properties
Property NameValue
Genbank descriptionEST0106 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ154 similar to polygalacturonase (acc# AAC64184), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250319 ID=CB250319; Name=CB250319; organism=Citrus sinensis; type=EST; length=708bp
ACAGGGGGTCAAAGTTTCGGCCGCCGGTGACAGCCCAAACACCGATGGCA
TTCATGTTCAAGCATCAAGTGGTGTCACAATTTTGGACAGCAAAATTGGG
ACTGGTGATGATTGTGTATCAGTTGGACCTGGCGCCACCAACTTATGGAT
TGAAAATGTTGCTTGTGGCCCAGGCCATGGGATCAGCATTGGCAGCTTGG
GCAAAGAGCAACAAGAGGCTGGAGTGCAAAATGTGACAGTAACATCTGTG
ACATTTACAGGCACTCAAAATGGAGTGAGGATTAAGTCCTGGGGGAGACC
AAGCAATGGATTTGCCAGGAACATTCTTTTCCAACACGCTCTTATGAACA
ATGTCGATAATCCAATCATAATTGATCAAAATTACTGCCCTGACAACAAC
AATTGCCCTGGACAGGCTTCAGGGGTTAAAATCAGTGATGTGATATATCA
AGACATTCATGGAACTTCGGCAACGGAAGTTGGAGTAAAGCTCGATTGCA
GTTCGAAGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCATT
TACAAGAATCAACCAGCTGAAGCTTCCTGCGCCAACGCTGATGGATCGGC
CTCTGGATTTATTCTGCCAAATAGTTGCTTGAAGACTTGAAGTTATGAAA
AGTATTTGAGTTGGAAAAAAAAGGCATAGGAAGCCGATCATGATTATATA
GTTAGTAG
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