CB250323

Overview
NameCB250323
Unique NameCB250323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6985 contig Csv1_Contig6985:646..1154. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: OYEB_SCHPO (Putative NADPH dehydrogenase C5H10.10 OS=Schizosaccharomyces pombe GN=SPAC5H10.10 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   85 EIPQIVNDFRLAARNAI-EAGFDGIELHGAHGYLIDQFMKDQVNDRTD-QYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPR 441
            +I + +  +  AA+ A+   G DG+E+H  +G+L+D+F+ +   D+ D +Y GSLENR RF LE++E+V N IG +RVG R+SPF++  +  DS    + +          + Y H +EPR
Sbjct:  169 DIQEHITTYTEAAKRAVFGCGADGVEVHQVNGFLLDKFVLNGYGDKCDPEYCGSLENRARFCLELLESVVNAIGQERVGYRISPFSDIWKDKDSFEAHVFMIKKIKERFPNLAYLHAIEPR 289          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACHD (NADPH dehydrogenase OS=Bacillus halodurans GN=namA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.433e-16
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   19 PQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGI 414
            P I  + +   +   P  +  ++I + +  F+L A  A +AGFD IE+HGAHGYLI++F+    N RTD YGGSLENR R   EI+  +   +    + +R+S  A Y E G+   + + L  A+ + K GI
Sbjct:  115 PIIAPSAISYDKMKTPDAMTEEQISETIEAFKLGALRAKKAGFDIIEIHGAHGYLINEFLSPLTNKRTDAYGGSLENRYRLLREIISEIQT-VWDGPLFVRISA-AEYAEGGNELSDFITL--AKWMKKQGI 242          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACA2 (NADPH dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=namA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.790e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   52 QFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESG 354
            Q   P  + T++I + + +F+ AA  A EAGFD IELH AHGYL+ +F+    N RTD+YGGS ENR RF  E +EAV  E+    + +R+S  ++Y + G
Sbjct:  127 QSKTPAEMTTEQIKETIQEFKQAAARAKEAGFDIIELHAAHGYLMHEFLSPLSNHRTDEYGGSHENRYRFLGETIEAV-KEVWDGPLFVRISA-SDYTDKG 225          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACP2 (NADPH dehydrogenase OS=Bacillus pumilus (strain SAFR-032) GN=namA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.562e-16
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   52 QFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGL 381
            Q   P ++  D+I   V  F+ AA  A +AGFD IE+HGAHGYLI++F+    N RTD YGGS ENR RF  E+V AV NE+    + +R+S  ++Y   G    + +G+
Sbjct:  127 QSKTPVQMSVDQIKDTVQAFQDAAVRAKKAGFDIIEIHGAHGYLINEFLSPLANHRTDDYGGSPENRYRFLREVVNAV-NEVWDGPLFVRVSA-SDYTTKGLDIADYIGI 234          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACCR (NADPH dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=namA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.200e-15
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I + +  F+ AA  + +AGFD IELHGAHGYLI++F+    N RTD+YGGS ENR RF  EI+++V NE+    + +R+S       + D +P+ L
Sbjct:  131 PVEMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDKYGGSPENRYRFLREIIDSV-NEVWDGPIFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACC4 (NADPH dehydrogenase OS=Bacillus cereus (strain B4264) GN=namA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.200e-15
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I + +  F+ AA  + +AGFD IELHGAHGYLI++F+    N RTD+YGGS ENR RF  EI+++V NE+    + +R+S       + D +P+ L
Sbjct:  131 PVEMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDKYGGSPENRYRFLREIIDSV-NEVWDGPIFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_GEOSW (NADPH dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=namA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P+ +   +I + +  F+  AR A EAGFD IE+HGAHGYLI++F+    N R D+YGGS ENR RF  EI++AV  E+    + +R+S       + D +PE L
Sbjct:  131 PKEMTKADIEETIQAFQNGARRAKEAGFDIIEIHGAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEIIDAV-REVWDGPLFVRIS-------ASDYHPEGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACC2 (NADPH dehydrogenase OS=Bacillus cereus (strain G9842) GN=namA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.901e-15
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I + +  F+ AA  + +AGFD IELHGAHGYLI++F+    N RTD+YGGS ENR RF  EI+++V N++    + +R+S       + D +P+ L
Sbjct:  131 PVEMNIQQIKETILAFQRAALRSKQAGFDVIELHGAHGYLINEFLSPLTNKRTDEYGGSPENRYRFLREIIDSV-NKVWDGPIFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACSU (NADPH dehydrogenase OS=Bacillus subtilis GN=namA PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 8.361e-15
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   52 QFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 285
            Q   P  +  +++ + V +F+ AA  A EAGFD IE+H AHGYLI +F+    N RTD+YGGS ENR RF  EI++ V
Sbjct:  127 QSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEV 204          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACCQ (NADPH dehydrogenase OS=Bacillus cereus (strain Q1) GN=namA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.361e-15
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I   V  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS ENR RF  EI+E++ NE+    + +R+S       + D +P+ L
Sbjct:  131 PIEMSKHQIKDTVLAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLTNKRTDEYGGSPENRYRFLREIIESI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
The following BLAST results are available for this feature:
BLAST of CB250323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
OYEB_SCHPO2.599e-1637.19Putative NADPH dehydrogenase C5H10.10 OS=Schizosac... [more]
NAMA_BACHD4.433e-1637.12NADPH dehydrogenase OS=Bacillus halodurans GN=namA... [more]
NAMA_BACA25.790e-1644.55NADPH dehydrogenase OS=Bacillus amyloliquefaciens ... [more]
NAMA_BACP27.562e-1643.64NADPH dehydrogenase OS=Bacillus pumilus (strain SA... [more]
NAMA_BACCR2.200e-1542.31NADPH dehydrogenase OS=Bacillus cereus (strain ATC... [more]
NAMA_BACC42.200e-1542.31NADPH dehydrogenase OS=Bacillus cereus (strain B42... [more]
NAMA_GEOSW3.753e-1543.27NADPH dehydrogenase OS=Geobacillus sp. (strain WCH... [more]
NAMA_BACC24.901e-1541.35NADPH dehydrogenase OS=Bacillus cereus (strain G98... [more]
NAMA_BACSU8.361e-1548.72NADPH dehydrogenase OS=Bacillus subtilis GN=namA P... [more]
NAMA_BACCQ8.361e-1542.31NADPH dehydrogenase OS=Bacillus cereus (strain Q1)... [more]

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Properties
Property NameValue
Genbank descriptionEST0110 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ159 similar to 12-phytodienoate reductase OPR2 (acc# NP_177795), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250323 ID=CB250323; Name=CB250323; organism=Citrus sinensis; type=EST; length=509bp
ACAGACAAGCCATTGACCCCTCAAATCCGCGCTAATGGTGTTGATATTGC
ACAATTCACTCCTCCAAGGCGGCTAAGGACAGATGAAATCCCTCAAATTG
TGAATGATTTCAGGCTTGCTGCAAGAAACGCAATTGAGGCTGGTTTTGAT
GGCATTGAGCTCCACGGTGCACATGGCTACCTAATTGACCAATTTATGAA
GGATCAAGTGAATGATCGAACAGACCAGTATGGAGGATCCTTAGAGAATC
GTTGCCGTTTTGCTTTAGAAATAGTTGAAGCTGTTTCCAATGAAATAGGG
GCAGATAGGGTTGGGATAAGACTATCTCCGTTTGCAAACTATATGGAATC
AGGAGACTCTAACCCAGAAGCTTTAGGTCTTTACATGGCAGAATCCTTGA
ACAAATATGGTATCCTCTATTGTCACATGGTTGAGCCAAGGATGAAAACA
GTTGGAGAAAAATCTGAATGTCCTCACAGTTTGCTGCCCATGAGGAAGGC
TTTCAAGGG
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