CB250323

Overview
NameCB250323
Unique NameCB250323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6985 contig Csv1_Contig6985:646..1154. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACAA (NADPH dehydrogenase OS=Bacillus anthracis (strain A0248) GN=namA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.149e-14
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS ENR RF  EI++++ NE+    + +R+S       + D +P+ L
Sbjct:  131 PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACLD (NADPH dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=namA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.244e-14
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  +  ++I + V  F+  A  A  AGFD IE+HGAHGYLI++F+    N R D+YGGS ENR R   E+++AV  E+ A  + +R+S
Sbjct:  132 PVEMTKEDIKETVQAFKKGAERAKAAGFDIIEIHGAHGYLINEFLSPLSNKREDEYGGSPENRYRLLREVIDAV-KEVWAGPLFVRVS 218          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACHK (NADPH dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=namA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L
Sbjct:  131 PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L
Sbjct:  131 PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P  +   +I   +  F+ AA  + +AGFD IE+HGAHGYLI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L
Sbjct:  131 PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_GEOTN (NADPH dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=namA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEAL 375
            P+ +   +I + V  F+  AR A +AGFD IE+H AHGYLI++F+    N R D+YGGS ENR  F  E+++AV  E+    + +R+S       + D +P+ L
Sbjct:  131 PKEMTKADIEKTVQAFQDGARRAKKAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYHFLGEVIDAV-REVWDGPLFVRIS-------ASDYHPDGL 226          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_LISW6 (NADPH dehydrogenase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=namA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_LISMO (NADPH dehydrogenase OS=Listeria monocytogenes GN=namA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_LISMH (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=namA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_LISMF (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=namA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
The following BLAST results are available for this feature:
BLAST of CB250323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NAMA_BACAA4.149e-1440.38NADPH dehydrogenase OS=Bacillus anthracis (strain ... [more]
NAMA_BACLD9.244e-1444.32NADPH dehydrogenase OS=Bacillus licheniformis (str... [more]
NAMA_BACHK1.577e-1339.42NADPH dehydrogenase OS=Bacillus thuringiensis subs... [more]
NAMA_BACC31.577e-1339.42NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACAH1.577e-1339.42NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
NAMA_GEOTN5.992e-1339.42NADPH dehydrogenase OS=Geobacillus thermodenitrifi... [more]
NAMA_LISW61.335e-1244.32NADPH dehydrogenase OS=Listeria welshimeri serovar... [more]
NAMA_LISMO1.335e-1244.32NADPH dehydrogenase OS=Listeria monocytogenes GN=n... [more]
NAMA_LISMH1.335e-1244.32NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
NAMA_LISMF1.335e-1244.32NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0110 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ159 similar to 12-phytodienoate reductase OPR2 (acc# NP_177795), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250323 ID=CB250323; Name=CB250323; organism=Citrus sinensis; type=EST; length=509bp
ACAGACAAGCCATTGACCCCTCAAATCCGCGCTAATGGTGTTGATATTGC
ACAATTCACTCCTCCAAGGCGGCTAAGGACAGATGAAATCCCTCAAATTG
TGAATGATTTCAGGCTTGCTGCAAGAAACGCAATTGAGGCTGGTTTTGAT
GGCATTGAGCTCCACGGTGCACATGGCTACCTAATTGACCAATTTATGAA
GGATCAAGTGAATGATCGAACAGACCAGTATGGAGGATCCTTAGAGAATC
GTTGCCGTTTTGCTTTAGAAATAGTTGAAGCTGTTTCCAATGAAATAGGG
GCAGATAGGGTTGGGATAAGACTATCTCCGTTTGCAAACTATATGGAATC
AGGAGACTCTAACCCAGAAGCTTTAGGTCTTTACATGGCAGAATCCTTGA
ACAAATATGGTATCCTCTATTGTCACATGGTTGAGCCAAGGATGAAAACA
GTTGGAGAAAAATCTGAATGTCCTCACAGTTTGCTGCCCATGAGGAAGGC
TTTCAAGGG
back to top