CB250323

Overview
NameCB250323
Unique NameCB250323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6985 contig Csv1_Contig6985:646..1154. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_LISMC (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=namA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: DHTM_METME (Trimethylamine dehydrogenase OS=Methylophilus methylotrophus GN=tmd PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   67 RRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD 306
            + +   +I Q+   +  AA+ + +AGFD + ++GAH YL  QF+    N RTD+YGGSLENR RF LE +E V + +G+D
Sbjct:  138 KEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSD 217          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: NAMA_LISIN (NADPH dehydrogenase OS=Listeria innocua GN=namA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLS 327
            P  L  + I ++V DF+ AA  A EAGFD IE+H AHGYLI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPISNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVS 216          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: BAIH_EUBSP (NADH-dependent flavin oxidoreductase OS=Eubacterium sp. (strain VPI 12708) GN=baiH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 49/137 (35.77%), Postives = 67/137 (48.91%), Query Frame = 1
Query:   10 PLTPQIRANGVDIAQFTPPRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLID-QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGI 414
            PL P    N    A     R +  DEI  I+  F  AAR A EAG   I LH AH Y++   F+    N R D+YGGSL+NR RF +E++E     +  D  + +R+S     M  G+S  +   LY+A      G+
Sbjct:  121 PLGPSANTN----ANCHVSRSISIDEIHDIIKQFGQAARRAEEAGCGAISLHCAHAYMLPGSFLSPLRNKRMDEYGGSLDNRARFVIEMIEEARRNVSPDFPIFLRISG-DERMVGGNSLEDM--LYLAPKFEAAGV 250          
BLAST of CB250323 vs. ExPASy Swiss-Prot
Match: STCD_RHIME (Probable N-methylproline demethylase OS=Rhizobium meliloti GN=stcD PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 42/131 (32.06%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   64 PRRLRTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRV-GIRLSPFANYMESGDSNPEALGLYMAESLNKYGIL-YCHMVEPRMKT 450
            P+++   +I +I+ DF  AA      G DG+EL  A+G+LIDQF     N+    YGGSL+NR RF  ++++A+   +G + + G+R +  A+    G ++ +A GL +++ L + G++ Y +++   + T
Sbjct:  135 PKKIEDWDIDRIIKDFADAAERMKAGGMDGVELE-AYGHLIDQFASPLTNELDGPYGGSLDNRMRFCFDVLKAIRARVGDEFILGVRYT--ADECLPGGTD-KAEGLEISKRLKESGLIDYLNIIRGHIDT 261          
The following BLAST results are available for this feature:
BLAST of CB250323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NAMA_LISMC1.335e-1244.32NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]
DHTM_METME1.743e-1243.75Trimethylamine dehydrogenase OS=Methylophilus meth... [more]
NAMA_LISIN2.277e-1244.32NADPH dehydrogenase OS=Listeria innocua GN=namA PE... [more]
BAIH_EUBSP5.072e-1235.77NADH-dependent flavin oxidoreductase OS=Eubacteriu... [more]
STCD_RHIME1.927e-1132.06Probable N-methylproline demethylase OS=Rhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionEST0110 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ159 similar to 12-phytodienoate reductase OPR2 (acc# NP_177795), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250323 ID=CB250323; Name=CB250323; organism=Citrus sinensis; type=EST; length=509bp
ACAGACAAGCCATTGACCCCTCAAATCCGCGCTAATGGTGTTGATATTGC
ACAATTCACTCCTCCAAGGCGGCTAAGGACAGATGAAATCCCTCAAATTG
TGAATGATTTCAGGCTTGCTGCAAGAAACGCAATTGAGGCTGGTTTTGAT
GGCATTGAGCTCCACGGTGCACATGGCTACCTAATTGACCAATTTATGAA
GGATCAAGTGAATGATCGAACAGACCAGTATGGAGGATCCTTAGAGAATC
GTTGCCGTTTTGCTTTAGAAATAGTTGAAGCTGTTTCCAATGAAATAGGG
GCAGATAGGGTTGGGATAAGACTATCTCCGTTTGCAAACTATATGGAATC
AGGAGACTCTAACCCAGAAGCTTTAGGTCTTTACATGGCAGAATCCTTGA
ACAAATATGGTATCCTCTATTGTCACATGGTTGAGCCAAGGATGAAAACA
GTTGGAGAAAAATCTGAATGTCCTCACAGTTTGCTGCCCATGAGGAAGGC
TTTCAAGGG
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