CB250347

Overview
NameCB250347
Unique NameCB250347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10666 contig Csv1_Contig10666:131..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_HUMAN (Casein kinase I isoform alpha OS=Homo sapiens GN=CSNK1A1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_CHICK (Casein kinase I isoform alpha OS=Gallus gallus GN=CSNK1A1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_BOVIN (Casein kinase I isoform alpha OS=Bos taurus GN=CSNK1A1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 49/113 (43.36%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC11_YEAST (Casein kinase I homolog 1 OS=Saccharomyces cerevisiae GN=YCK1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.407e-19
Identity = 40/116 (34.48%), Postives = 76/116 (65.52%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G++G + ++V+D+LGPSL D+++      S++ V  +A++ I+++E +H+   ++ D+KP+NFL+G PG PD   +  +D G+A ++RD  T  H+ Y ++  +  GT RY S
Sbjct:  129 YYFGQEGLHNILVIDLLGPSLEDLFDWCGRKFSVKTVVQVAVQMITLIEDLHAHDLIYRDIKPDNFLIGRPGQPDANNIHLIDFGMAKQYRDPKTKQHIPYREKKSL-SGTARYMS 243          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_RAT (Casein kinase I isoform alpha OS=Rattus norvegicus GN=Csnk1a1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.912e-19
Identity = 49/113 (43.36%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G+  DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+RD+ T  H+ Y +  ++  GT RYAS
Sbjct:   80 GQGKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKYRDNRTRQHIPYREDKNL-TGTARYAS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1G3_HUMAN (Casein kinase I isoform gamma-3 OS=Homo sapiens GN=CSNK1G3 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G  G Y  MV+++LGPSL D+++    T S++ V  IAI+ IS +E +HSK  ++ DVKPENFL+G PG   ++ +  +D GLA ++ D  T  H+ Y +   +  GT RY S
Sbjct:  103 YYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSL-TGTARYMS 217          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1G3_BOVIN (Casein kinase I isoform gamma-3 (Fragment) OS=Bos taurus GN=CSNK1G3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G  G Y  MV+++LGPSL D+++    T S++ V  IAI+ IS +E +HSK  ++ DVKPENFL+G PG   ++ +  +D GLA ++ D  T  H+ Y +   +  GT RY S
Sbjct:   89 YYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSL-TGTARYMS 203          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: CKI3_SCHPO (Casein kinase I homolog 3 OS=Schizosaccharomyces pombe GN=cki3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 43/116 (37.07%), Postives = 76/116 (65.52%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G++G Y ++VMD+LGPSL D+++      S + VA IA + I+ ++ +H + +++ D+KP+NFL+G PG+  E  ++ VD G+A ++RD  T +H  Y++   +  GT RY S
Sbjct:   75 YYYGQEGMYNLLVMDLLGPSLEDLFDYCGRRFSPKTVAMIAKQMITRIQSVHERHFIYRDIKPDNFLIGFPGSKTENVIYAVDFGMAKQYRDPKTHVHRPYNEHKSL-SGTARYMS 189          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1G3_RAT (Casein kinase I isoform gamma-3 OS=Rattus norvegicus GN=Csnk1g3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.691e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G  G Y  MV+++LGPSL D+++    T S++ V  IAI+ IS +E +HSK  ++ DVKPENFL+G PG   ++ +  +D GLA ++ D  T  H+ Y +   +  GT RY S
Sbjct:  103 YYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQQVIHIIDFGLAKEYIDPETKKHIPYREHKSL-TGTARYMS 217          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1G3_MOUSE (Casein kinase I isoform gamma-3 OS=Mus musculus GN=Csnk1g3 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.691e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G  G Y  MV+++LGPSL D+++    T S++ V  IAI+ IS +E +HSK  ++ DVKPENFL+G PG   ++ +  +D GLA ++ D  T  H+ Y +   +  GT RY S
Sbjct:  103 YYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQQVIHIIDFGLAKEYIDPETKKHIPYREHKSL-TGTARYMS 217          
The following BLAST results are available for this feature:
BLAST of CB250347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KC1A_HUMAN3.407e-1943.36Casein kinase I isoform alpha OS=Homo sapiens GN=C... [more]
KC1A_CHICK3.407e-1943.36Casein kinase I isoform alpha OS=Gallus gallus GN=... [more]
KC1A_BOVIN3.407e-1943.36Casein kinase I isoform alpha OS=Bos taurus GN=CSN... [more]
KC11_YEAST3.407e-1934.48Casein kinase I homolog 1 OS=Saccharomyces cerevis... [more]
KC1A_RAT9.912e-1943.36Casein kinase I isoform alpha OS=Rattus norvegicus... [more]
KC1G3_HUMAN1.295e-1840.52Casein kinase I isoform gamma-3 OS=Homo sapiens GN... [more]
KC1G3_BOVIN1.295e-1840.52Casein kinase I isoform gamma-3 (Fragment) OS=Bos ... [more]
CKI3_SCHPO1.295e-1837.07Casein kinase I homolog 3 OS=Schizosaccharomyces p... [more]
KC1G3_RAT1.691e-1840.52Casein kinase I isoform gamma-3 OS=Rattus norvegic... [more]
KC1G3_MOUSE1.691e-1840.52Casein kinase I isoform gamma-3 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0137 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ202 similar to casein kinase (acc# NP_180147), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250347 ID=CB250347; Name=CB250347; organism=Citrus sinensis; type=EST; length=350bp
ACACTTCAAGGGCCGGCAAGGTGACTATTATGTGATGGTAATGGATATGC
TGGGACCAAGCTTGTGGGATGTATGGAATAATAACTCGCATACAATGTCC
ATTGAAATGGTTGCCTGCATTGCCATTGAAGCAATATCGATATTGGAGAA
GATGCACTCCAAAGGGTATGTGCATGGAGATGTGAAGCCTGAAAATTTTC
TGCTTGGTCCTCCTGGAACACCTGATGAGAAGAAATTATTCCCTGTTGAC
CTTGGACTAGCTACTAAATGGCGAGACAGCACAACTGGCATGCATGTTGA
ATATGACCAAAGGCCTGATGTTTTCAGGGGAACAGTCCGTTATGCTAGTG
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