CB250347

Overview
NameCB250347
Unique NameCB250347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10666 contig Csv1_Contig10666:131..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KIN20_CAEEL (Casein kinase I isoform delta OS=Caenorhabditis elegans GN=kin-20 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.699e-16
Identity = 45/113 (39.82%), Postives = 73/113 (64.60%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++GDY VMVM++LGPSL D++N      S++ V  +A + +S +E +H + Y+H D+KP+NFL+G     +   ++ +D GLA ++RDS    H+ Y +  ++  GT RYAS
Sbjct:  254 GQEGDYNVMVMELLGPSLEDLFNFCQRKFSLKTVLLLADQMLSRVEFIHCRDYIHRDIKPDNFLMGLGKRGN--LVYIIDFGLAKRYRDS-KHQHIAYRENKNL-TGTARYAS 362          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1_PLAYO (Casein kinase I OS=Plasmodium yoelii yoelii GN=CK1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.699e-16
Identity = 43/116 (37.07%), Postives = 73/116 (62.93%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G +GD+ +MV+D+LGPSL D++   +   S++ V   A + ++ +E +HSK ++H D+KP+NFL+G         +  +D GLA K+RDS +  H+ Y +  ++  GT RYAS
Sbjct:   69 YWYGIEGDFTIMVLDLLGPSLEDLFTLCNRKFSLKTVLMTADQMLNRIEYVHSKNFIHRDIKPDNFLIG--RGKKVTLIHIIDFGLAKKYRDSRSHTHIPYKEGKNL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1_PLAF7 (Casein kinase I OS=Plasmodium falciparum (isolate 3D7) GN=CK1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.699e-16
Identity = 43/116 (37.07%), Postives = 73/116 (62.93%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G +GD+ +MV+D+LGPSL D++   +   S++ V   A + ++ +E +HSK ++H D+KP+NFL+G         +  +D GLA K+RDS +  H+ Y +  ++  GT RYAS
Sbjct:   69 YWYGIEGDFTIMVLDLLGPSLEDLFTLCNRKFSLKTVLMTADQMLNRIEYVHSKNFIHRDIKPDNFLIG--RGKKVTLIHIIDFGLAKKYRDSRSHTHIPYKEGKNL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: HRR25_YEAST (Casein kinase I homolog HRR25 OS=Saccharomyces cerevisiae GN=HRR25 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16
Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            GR+G+Y  MV+D+LGPSL D++N      S + V  +A++    ++ +H + ++H D+KP+NFL+G         +  +D GL+ K+RD  T  H+ Y +   +  GT RYAS
Sbjct:   72 GREGEYNAMVIDLLGPSLEDLFNYCHRRFSFKTVIMLALQMFCRIQYIHGRSFIHRDIKPDNFLMGVGRR--GSTVHVIDFGLSKKYRDFNTHRHIPYRENKSL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: CKI1_SCHPO (Casein kinase I homolog 1 OS=Schizosaccharomyces pombe GN=cki1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16
Identity = 38/116 (32.76%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G++G + ++V+D+LGPSL D+ +      S++ VA  A + ++ ++ +H K  V+ D+KP+NFL+G P + +   ++ VD G+   +RD  T  H+ Y ++ ++  GT RY S
Sbjct:   72 YYFGQEGLHNILVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNL-SGTARYMS 186          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_DROME (Casein kinase I isoform alpha OS=Drosophila melanogaster GN=CkIalpha PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G++ ++  +VMD+LGPSL D++N  +   +I+ V  +  + I  LE +H K ++H D+KP+NFL+G     +  KLF +D GLA K+RD  T  H+ Y +  ++  GT RYAS
Sbjct:   83 GKEKNFNTLVMDLLGPSLEDLFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKFRDPHTRHHIVYREDKNL-TGTARYAS 192          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1_PLAF4 (Casein kinase I OS=Plasmodium falciparum (isolate Dd2) GN=CK1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15
Identity = 42/116 (36.21%), Postives = 71/116 (61.21%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G +GD+ +MV+D+LGPSL D++   +   S++ V   A + ++ +E +HSK ++H D+KP+NFL+G         +  +D GLA K+RDS +     Y +  ++  GT RYAS
Sbjct:   69 YWYGIEGDFTIMVLDLLGPSLEDLFTLCNRKFSLKTVRMTADQMLNRIEYVHSKNFIHRDIKPDNFLIG--RGKKVTLIHIIDFGLAKKYRDSRSHTSYPYKEGKNL-TGTARYAS 181          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: HHP2_SCHPO (Casein kinase I homolog hhp2 OS=Schizosaccharomyces pombe GN=hhp2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            G    Y  MVMD+LGPSL D++       +++ V  +A + IS +E +HSK ++H D+KP+NFL+          +  +D GLA K+RD  T +H+ Y    ++  GT RYAS
Sbjct:   75 GVTNSYNAMVMDLLGPSLEDLFCYCGRKFTLKTVLLLADQLISRIEYVHSKSFLHRDIKPDNFLM----KKHSNVVTMIDFGLAKKYRDFKTHVHIPYRDNKNL-TGTARYAS 182          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC1A_PIG (Casein kinase I isoform alpha (Fragment) OS=Sus scrofa GN=CSNK1A1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.254e-13
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   11 GRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPPGTPDEKKLFPVDLGLATKW 271
            G++ DY V+VMD+LGPSL D++N  S   +++ V  +A + IS +E +H+K ++H D+KP+NFL+G     +  KLF +D GLA K+
Sbjct:   41 GQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCN--KLFLIDFGLAKKY 125          
BLAST of CB250347 vs. ExPASy Swiss-Prot
Match: KC13_YEAST (Casein kinase I homolog 3 OS=Saccharomyces cerevisiae GN=YCK3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 37/132 (28.03%), Postives = 68/132 (51.52%), Query Frame = 2
Query:    2 HFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSKGYVHGDVKPENFL------LGPPG----------TPDEKKLFPVDLGLATKWRDSTTGMHVEYDQRPDVFRGTVRYAS 349
            ++ G++G + ++++D+LGPSL D++       S++    +A + I  +  +H    ++ D+KP+NFL      + P G            D   ++ VD G+A ++RD  T  H+ Y +R  +  GT RY S
Sbjct:   91 YYFGQEGMHNILIIDLLGPSLEDLFEWCGRKFSVKTTCMVAKQMIDRVRAIHDHDLIYRDIKPDNFLISQYQRISPEGKVIKSCASSSNNDPNLIYMVDFGMAKQYRDPRTKQHIPYRERKSL-SGTARYMS 221          
The following BLAST results are available for this feature:
BLAST of CB250347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KIN20_CAEEL2.699e-1639.82Casein kinase I isoform delta OS=Caenorhabditis el... [more]
KC1_PLAYO2.699e-1637.07Casein kinase I OS=Plasmodium yoelii yoelii GN=CK1... [more]
KC1_PLAF72.699e-1637.07Casein kinase I OS=Plasmodium falciparum (isolate ... [more]
HRR25_YEAST6.013e-1636.28Casein kinase I homolog HRR25 OS=Saccharomyces cer... [more]
CKI1_SCHPO6.013e-1632.76Casein kinase I homolog 1 OS=Schizosaccharomyces p... [more]
KC1A_DROME1.750e-1539.82Casein kinase I isoform alpha OS=Drosophila melano... [more]
KC1_PLAF48.683e-1536.21Casein kinase I OS=Plasmodium falciparum (isolate ... [more]
HHP2_SCHPO1.934e-1438.05Casein kinase I homolog hhp2 OS=Schizosaccharomyce... [more]
KC1A_PIG1.254e-1343.68Casein kinase I isoform alpha (Fragment) OS=Sus sc... [more]
KC13_YEAST2.002e-1128.03Casein kinase I homolog 3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionEST0137 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ202 similar to casein kinase (acc# NP_180147), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250347 ID=CB250347; Name=CB250347; organism=Citrus sinensis; type=EST; length=350bp
ACACTTCAAGGGCCGGCAAGGTGACTATTATGTGATGGTAATGGATATGC
TGGGACCAAGCTTGTGGGATGTATGGAATAATAACTCGCATACAATGTCC
ATTGAAATGGTTGCCTGCATTGCCATTGAAGCAATATCGATATTGGAGAA
GATGCACTCCAAAGGGTATGTGCATGGAGATGTGAAGCCTGAAAATTTTC
TGCTTGGTCCTCCTGGAACACCTGATGAGAAGAAATTATTCCCTGTTGAC
CTTGGACTAGCTACTAAATGGCGAGACAGCACAACTGGCATGCATGTTGA
ATATGACCAAAGGCCTGATGTTTTCAGGGGAACAGTCCGTTATGCTAGTG
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