CB250356

Overview
NameCB250356
Unique NameCB250356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:35..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: ERP60_SCHMA (Probable protein disulfide-isomerase ER-60 OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.588e-23
Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = 2
Query:   74 LFFVS-ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFK-KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNV 460
            LF V+ A    V+ LT+DNF  E+     ALV+FYAPWCGHCKKLAPE+         K   V + KVDC   +S+CS++GV GYPT++ F  G L+  +Y GPR+   +A Y+ +  G   K  +  S+V
Sbjct:    8 LFLVAFASCSKVLELTKDNFHSELKSIPVALVKFYAPWCGHCKKLAPEFTSAAQIISGKTNDVKLVKVDCTTQESICSEFGVSGYPTLKIFRNGDLD-GEYNGPRNANGIANYMISRAGPVSKEVSTVSDV 137          

HSP 2 Score: 72.0182 bits (175), Expect = 1.377e-12
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  125 NFEKEVG-QDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNE 418
            NF++ V  +++  +V F+A WCGHCK L P+YE   +  K   ++++  +D   +  + S Y V+G+PTI + PKG    P  YEG R T  + +Y+  E
Sbjct:  367 NFDEIVNNEEKDVMVVFHAGWCGHCKNLMPKYEEAASKVKNEPNLVLAAMDATAN-DVPSPYQVRGFPTIYFVPKGKKSSPVSYEGGRDTNDIIKYLARE 465          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDI_HORVU (Protein disulfide-isomerase OS=Hordeum vulgare GN=PDI PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.124e-22
Identity = 52/127 (40.94%), Postives = 75/127 (59.06%), Query Frame = 2
Query:   86 SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKK-AKSVLIGKVDCDEHKS--LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSN 457
            +A  + V+ L  DNF+  +GQ    LVEFYAPWCGHCK LAPEYE+      K   ++++ KVD ++ K+  L  KY VQG+PT++ F  G    ++Y+GPR  E + EY+  + G   K    P +
Sbjct:   34 AAAPEAVLTLHADNFDDAIGQHPFILVEFYAPWCGHCKSLAPEYEKAAQLLSKHDPAIVLAKVDANDEKNKPLAGKYEVQGFPTLKIFRNGGKSIQEYKGPREAEGIVEYLKKQVGPASKEIKAPED 160          

HSP 2 Score: 79.7221 bits (195), Expect = 6.603e-15
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAA 445
            + V V+  DN    V +  +  L+EFYAPWCGHCKKLAP  +   A+ +  + V+I K+D  E+  +  ++ VQGYPT+ +F   S +   YEG R+ + + +Y+     T  + AA
Sbjct:  381 EPVKVVVADNVHDVVFKSGKNVLIEFYAPWCGHCKKLAPILDEAAATLQSEEDVVIAKMDATEN-DVPGEFDVQGYPTL-YFVTPSGKKVSYEGGRTADEIVDYIRKNKETAGQAAA 495          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.124e-22
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTN 430
            V +L +   +  +G D+  LV F APWCGHCK LAP +E+L A+F     + I KVD D    K   ++YGV G+PTI++FPKGS  P+ Y G RS   L +++N + GT+
Sbjct:  143 VNILNDATIKGAIGGDKNVLVAFTAPWCGHCKNLAPTWEKLAATFASDPEITIAKVDADAPTGKKSAAEYGVSGFPTIKFFPKGSTTPEDYNGGRSEADLVKFLNEKAGTH 253          

HSP 2 Score: 93.2041 bits (230), Expect = 5.771e-19
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYERLGASFKKAK-SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV-KIAAVPSNV 460
            V+ L   NF+  V +  +  LVEF+APWCGHCK LAP YE L  + + AK  V I KVD D  ++L  ++GVQG+PT+++F   S +P  Y+G R  ++L+ ++  + G    K  + PS V
Sbjct:   22 VLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFFDGKSEQPVDYKGGRDLDSLSNFIAEKTGVKARKKGSAPSLV 143          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA3_MOUSE (Protein disulfide-isomerase A3 OS=Mus musculus GN=Pdia3 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.468e-22
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 2
Query:   89 ALADDVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG 424
            A A DV+ LT++NFE  V     A   LVEF+APWCGHCK+LAPEYE      K    V + KVDC  + + C+KYGV GYPT++ F  G  E   Y+GPR+ + +  ++  + G
Sbjct:   22 AAASDVLELTDENFESRVSDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLKKQAG 133          

HSP 2 Score: 88.9669 bits (219), Expect = 1.088e-17
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNE 418
            V V+  +NF+  V + D+  L+EFYAPWCGHCK L P+Y+ LG    K  +++I K+D   +  + S Y V+G+PTI + P    L PKKYEG R       Y+  E
Sbjct:  378 VKVVVAENFDDIVNEEDKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVKGFPTIYFSPANKKLTPKKYEGGRELNDFISYLQRE 483          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 2.503e-22
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 2
Query:   53 LALGTLTLFFVSALA------DDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 403
            L LG ++  F  A++      DDV+ LT  NF +EV Q  G  LVEFYAPWCGHC++L PE+++   + K    V +G V+ D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +
Sbjct:    4 LVLGLVSCTFFLAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 125          

HSP 2 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 2
Query:   86 SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAK--SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 385
            S+   DVV LT+D F+K V       +VEFYAPWCGHCK L PE+       K+     V +  VD   ++ L S+YG++G+PTI+ F KG   P  Y+G R+
Sbjct:  156 SSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGE-SPVDYDGGRT 257          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22
Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = 2
Query:   53 LALGTLTLFF-VSAL---ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 403
            L L + T F  VSAL   +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L PE+++  ++ K    V +G V+ D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +
Sbjct:    6 LGLVSCTFFLAVSALYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAASALKDV--VKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 125          

HSP 2 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 2
Query:   86 SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAK--SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 385
            S+   DVV LT+D F+K V       +VEFYAPWCGHCK L PE+       K+     V +  VD   ++ L S+YG++G+PTI+ F KG   P  Y+G R+
Sbjct:  156 SSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGE-SPVDYDGGRT 257          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: SEP2_EMIHU (Protein disulfide-isomerase-like protein EhSep2 OS=Emiliania huxleyi GN=SEP2 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 2
Query:   53 LALGTLTLFFVSALAD-DVVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDE-HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKI 439
            +AL +LTL   +A A    + LT DNF++ V +  + A ++F APW GHCKK+ P+++ L ++F+ +K VLI  VDC    K LC KYGV+GYPTI++F     E + Y+G RS + L ++  NE G    +
Sbjct:    1 MALRSLTLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 2
Query:   95 ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 403
            +DDV+ LT  NF +EV Q     LVEFYAPWCGHC++L PE+++   + K    V +G VD D+H+SL  +YGVQG+PTI+ F     +P+ Y+G R+ EA+ +
Sbjct:   24 SDDVIELTPSNFNREVIQSNSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVGAVDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 125          

HSP 2 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   86 SALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAK--SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 385
            S+   DV+ LT+D F+K V   D   +VEFYAPWCGHCK L PE+       K+     V +  VD   ++ L ++YG++G+PTI+ F KG   P  Y+G R+
Sbjct:  156 SSSKKDVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGE-APVDYDGGRT 257          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.270e-22
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 2
Query:   53 LALGTLTLFFVSAL------ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 403
            L LG ++  F  A+      +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L PE+++   + K    V +G VD D+H SL  +YGVQG+PTI+ F      P+ Y+G R+ EA+ +
Sbjct:    4 LVLGLVSCTFFLAVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVD 125          

HSP 2 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   86 SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAK--SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 385
            S+   DV+ LT+D+F+K V       +VEFYAPWCGHCK L PE+    +  K+     V +  VD   ++ L S+YG++G+PTI+ F KG   P  Y+G R+
Sbjct:  156 SSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE-SPVDYDGGRT 257          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.513e-22
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 2
Query:   95 ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 403
            +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC++L PE+++   + K    V +G VD D+H SL  +YGVQG+PTI+ F      P+ Y+G R+ EA+ +
Sbjct:   24 SDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV--VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVD 125          

HSP 2 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = 2
Query:   86 SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAK--SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 385
            S+   DV+ LT+D+F+K V       +VEFYAPWCGHCK L PE+    +  K+     V +  VD   ++ L S+YG++G+PTI+ F KG   P  Y+G R+
Sbjct:  156 SSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE-SPVDYDGGRT 257          
The following BLAST results are available for this feature:
BLAST of CB250356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ERP60_SCHMA6.588e-2343.51Probable protein disulfide-isomerase ER-60 OS=Schi... [more]
PDI_HORVU1.124e-2240.94Protein disulfide-isomerase OS=Hordeum vulgare GN=... [more]
ERP38_NEUCR1.124e-2244.14Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
PDIA3_MOUSE1.468e-2245.22Protein disulfide-isomerase A3 OS=Mus musculus GN=... [more]
PDIA6_MOUSE2.503e-2243.55Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA6_RAT3.269e-2246.72Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
SEP2_EMIHU4.270e-2241.67Protein disulfide-isomerase-like protein EhSep2 OS... [more]
PDIA6_MESAU4.270e-2247.12Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA6_HUMAN4.270e-2244.35Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
PDIA6_PONAB9.513e-2248.08Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]

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Properties
Property NameValue
Genbank descriptionEST0150 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ219 similar to protein disulfide isomerase (acc# NP_182269), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250356 ID=CB250356; Name=CB250356; organism=Citrus sinensis; type=EST; length=464bp
CACGGGGGGAAAAAAAAAAAGAAAGAGAGAAATGGAGAGGTATCAGATCT
GGCTAGCTCTAGGCACTTTAACCTTGTTCTTCGTATCAGCTCTAGCGGAC
GATGTCGTTGTGCTAACAGAAGACAACTTCGAGAAGGAGGTTGGTCAGGA
CAGGGGAGCTCTTGTTGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAAA
AGCTTGCTCCAGAGTATGAGAGACTTGGTGCAAGCTTTAAGAAAGCAAAG
TCTGTCTTGATTGGAAAGGTGGACTGTGACGAGCATAAGAGCTTATGCAG
CAAATATGGTGTTCAAGGATACCCAACAATTCAATGGTTTCCTAAAGGTT
CTTTGGAACCCAAAAAGTATGAAGGGCCACGATCTACTGAAGCCCTTGCT
GAGTATGTGAATAATGAAGGAGGAACCAATGTGAAGATAGCTGCAGTCCC
ATCCAATGTGGTGG
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