CB250356

Overview
NameCB250356
Unique NameCB250356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:35..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA4_BOVIN (Protein disulfide-isomerase A4 OS=Bos taurus GN=PDIA4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.679e-18
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  107 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAK-SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG 424
            +VLT+DNF++ V      LVEFYAPWCGHCKKLAPEYE+      K+   + + KVD      L  ++ V  YPT++ F KG  +   Y GPR    + +Y+  + G
Sbjct:  179 LVLTKDNFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKSSPPIPLAKVDAIAETDLAKRFDVSSYPTLKIFRKG--KAFSYNGPREKYGIVDYMMEQSG 283          

HSP 2 Score: 88.1965 bits (217), Expect = 1.857e-17
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKK-AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTN 430
            V++L + NF+  V      L+EFYAPWCGHCK+ APEYE++ A+ K+    + + K+D     +L S++ V GYPTI+   KG  +   YEG R+ E +   V      N
Sbjct:   63 VLILNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAATLKENDPPIPVAKIDATSESALASRFDVSGYPTIKILKKG--QEVDYEGSRTQEEIVAKVKEVSQPN 170          

HSP 3 Score: 79.337 bits (194), Expect = 8.624e-15
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  152 RGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYE-GPRSTEALAEYV 409
            +  L+EFYAPWCGHCK+L P Y  LG  +K  K+++I K+D   +     +Y V+G+PTI + P G   +P K+E G R  E L++++
Sbjct:  542 KDVLIEFYAPWCGHCKQLEPVYTSLGKKYKGHKNLVIAKMDATANDVTSDRYKVEGFPTIYFAPSGDKKKPIKFEDGNRDLEHLSKFI 629          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDI1_SCHPO (Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces pombe GN=SPAC1F5.02 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.193e-18
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  101 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 418
            +V  + ++   + +  D+  +V+FYAPWCGHCK LAPEYE      +K   + + +VDC E   LCS+Y ++GYPT+  F  G  +  +Y GPR  +AL +Y+  +
Sbjct:   23 EVPKVNKEGLNELITADKVLMVKFYAPWCGHCKALAPEYESAADELEK-DGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGK-QISQYSGPRKHDALVKYMRKQ 126          

HSP 2 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF-PKGSLEPKKYEGPRSTEALAEYVN 412
            +D+VVL  DNF+  V  + +  LVEFYAPWCGHCK LAP YE+L   +    +V++ K+D  E+    S   + G+PTI +F     + P +YEG R+ E L+ +++
Sbjct:  355 EDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVS---ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFID 458          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDI_DROME (Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.864e-18
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASF-KKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 436
            + V+V T DNF++ +  +   LVEFYAPWCGHCK LAPEY +      +K   + + KVD      L  +Y V+GYPT+++F  GS  P +Y G R    +  +V  + G   K
Sbjct:   27 EGVLVATVDNFKQLIADNEFVLVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATVEGELAEQYAVRGYPTLKFFRSGS--PVEYSGGRQAADIIAWVTKKTGPPAK 138          

HSP 2 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 2
Query:  104 VVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 421
            V VL   NFE   + + +  LVEFYAPWCGHCK+LAP Y++L   +K  + ++I K+D   ++    K  +  +PTI++F K   +   +   R+ +   ++++  G
Sbjct:  369 VKVLVSSNFESVALDKSKSVLVEFYAPWCGHCKQLAPIYDQLAEKYKDNEDIVIAKMDSTANELESIK--ISSFPTIKYFRKEDNKVIDFNLDRTLDDFVKFLDANG 473          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDI2_ARATH (Protein disulfide-isomerase 2 OS=Arabidopsis thaliana GN=At1g77510 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.381e-18
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 2
Query:   68 LTLFFVSALADD----VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVL-IGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGG-TNVKIAAVPS 454
            L+LF  S  +++    V+ L   NF + + +    +VEFYAPWCGHC+KLAPEYE+  +        L + K+D  E  +K   ++Y +QG+PT++    G    + Y GPR  E +  Y+  + G  +V+I +  S
Sbjct:   15 LSLFVSSIRSEETKEFVLTLDHSNFTETISKHDFIVVEFYAPWCGHCQKLAPEYEKAASELSSHNPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNGPREAEGIVTYLKKQSGPASVEIKSADS 151          

HSP 2 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  107 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 409
            VV+ E   +      +  L+EFYAPWCGHC+KLAP  + +  SF+   SV+I K+D   +      + V+G+PTI +F   S     YEG R+ E    +V
Sbjct:  376 VVVAESLDDIVFKSGKNVLIEFYAPWCGHCQKLAPILDEVALSFQNDPSVIIAKLDATANDIPSDTFDVKGFPTI-YFRSASGNVVVYEGDRTKEDFINFV 475          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.857e-17
Identity = 48/119 (40.34%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   83 VSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 436
            VSAL +D+    +D+F KE  +D   LV+FYAPWCGHCKKL P +  +G   + + S + +GK+D   + S+ S++GV+G+PTI+   KG +    Y GPR+ E + E+ N   G  ++
Sbjct:   24 VSALVEDL----DDSF-KENRKDDIWLVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTIKAL-KGDM-AYNYRGPRTKEDIVEFANRVAGPLIR 135          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDI_YEAST (Protein disulfide-isomerase OS=Saccharomyces cerevisiae GN=PDI1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK-KYEGPRSTEALAEYVNNEGGTNVKIAA 445
            VV L  D+F + +      L EF+APWCGHCK +APEY +   +  + K++ + ++DC E++ LC ++ + G+P+++ F    +     YEGPR+ EA+ +++  +    V + A
Sbjct:   34 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVA 147          

HSP 2 Score: 72.4034 bits (176), Expect = 1.054e-12
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  152 RGALVEFYAPWCGHCKKLAPEYERLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEGGTNV 433
            +  LV +YAPWCGHCK+LAP Y+ L  ++  A S VLI K+D  E+        ++GYPTI  +P G   E   Y+G RS ++L +++   G  +V
Sbjct:  395 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDV 488          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA2_PONAB (Protein disulfide-isomerase A2 OS=Pongo abelii GN=PDIA2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGG 424
            D ++VL+       + +    LVEFYAPWCGHC+ LAPEY +  A      S V++ KVD      L  ++GV  YPT+++F  G+   P++Y GPR  E +AE++    G
Sbjct:   42 DGILVLSRHTLGLALREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESSVVMLAKVDGPAQPELAEEFGVTEYPTLKFFRDGNRTHPEEYTGPREAEGIAEWLRRRVG 152          

HSP 2 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 33/108 (30.56%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  104 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEG 421
            V  L   NFE+    + +   V+FYAPWC HCK++AP +E L   ++  + V+I ++D   ++     + V G+PT+++FP G   +  +Y+  R     +++++N G
Sbjct:  390 VKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDVIIAELDATANE--LDAFAVHGFPTLKYFPAGPGRKVIEYKSTRDLGTFSKFLDNGG 495          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: YEU5_SCHPO (Thioredoxin domain-containing protein C13F5.05, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC13F5.05 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.136e-17
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  101 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW-FPK---GSLEPKKYEGPRSTEALAEYVNNEGGTNVKI 439
            + + L   NF K V     +LV FYAPWCG+CKKL P Y++L ++      V     D D+++++CS+Y VQG+PTI+  +P     SL    Y G RS ++L ++V++   + VKI
Sbjct:   32 NTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVKI 148          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA2_HUMAN (Protein disulfide-isomerase A2 OS=Homo sapiens GN=PDIA2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASF-KKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTEALAEYVNNEGG 424
            D ++VL+       + +    LVEFYAPWCGHC+ LAPEY +  A    ++  V + KVD    + L  ++GV  YPT+++F  G+   P++Y GPR  E +AE++    G
Sbjct:   42 DGILVLSRHTLGLALREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFGVTEYPTLKFFRNGNRTHPEEYTGPRDAEGIAEWLRRRVG 152          

HSP 2 Score: 70.4774 bits (171), Expect = 4.006e-12
Identity = 33/108 (30.56%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  104 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEG 421
            V  L   NFE+    + +   V+FYAPWC HCK++AP +E L   ++  + ++I ++D   ++     + V G+PT+++FP G   +  +Y+  R  E  +++++N G
Sbjct:  390 VKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAELDATANE--LDAFAVHGFPTLKYFPAGPGRKVIEYKSTRDLETFSKFLDNGG 495          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   50 WLALGTLTLFFVSALADDVVV--LTEDNFE--KEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 436
            W +   L L     L D VV     ED  E  KE   D   LV+FYAPWCGHCKKL P +  +G   K   S V +GK+D   + S+ S++GV+GYPTI+   KG L    + GPR+ + + E+ +   G  ++
Sbjct:    4 WKSWAALRLCATVVLLDMVVCKGFVEDLDESFKENRNDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNHRGPRTKDDIIEFAHRVSGALIR 135          
The following BLAST results are available for this feature:
BLAST of CB250356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PDIA4_BOVIN1.679e-1842.06Protein disulfide-isomerase A4 OS=Bos taurus GN=PD... [more]
PDI1_SCHPO2.193e-1838.68Putative protein disulfide-isomerase C1F5.02 OS=Sc... [more]
PDI_DROME2.864e-1839.47Protein disulfide-isomerase OS=Drosophila melanoga... [more]
PDI2_ARATH6.381e-1834.31Protein disulfide-isomerase 2 OS=Arabidopsis thali... [more]
TMX3_XENLA1.857e-1740.34Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
PDI_YEAST3.167e-1733.04Protein disulfide-isomerase OS=Saccharomyces cerev... [more]
PDIA2_PONAB3.167e-1738.74Protein disulfide-isomerase A2 OS=Pongo abelii GN=... [more]
YEU5_SCHPO4.136e-1738.46Thioredoxin domain-containing protein C13F5.05, mi... [more]
PDIA2_HUMAN5.402e-1737.84Protein disulfide-isomerase A2 OS=Homo sapiens GN=... [more]
TMX3_PONAB4.573e-1638.81Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionEST0150 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ219 similar to protein disulfide isomerase (acc# NP_182269), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250356 ID=CB250356; Name=CB250356; organism=Citrus sinensis; type=EST; length=464bp
CACGGGGGGAAAAAAAAAAAGAAAGAGAGAAATGGAGAGGTATCAGATCT
GGCTAGCTCTAGGCACTTTAACCTTGTTCTTCGTATCAGCTCTAGCGGAC
GATGTCGTTGTGCTAACAGAAGACAACTTCGAGAAGGAGGTTGGTCAGGA
CAGGGGAGCTCTTGTTGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAAA
AGCTTGCTCCAGAGTATGAGAGACTTGGTGCAAGCTTTAAGAAAGCAAAG
TCTGTCTTGATTGGAAAGGTGGACTGTGACGAGCATAAGAGCTTATGCAG
CAAATATGGTGTTCAAGGATACCCAACAATTCAATGGTTTCCTAAAGGTT
CTTTGGAACCCAAAAAGTATGAAGGGCCACGATCTACTGAAGCCCTTGCT
GAGTATGTGAATAATGAAGGAGGAACCAATGTGAAGATAGCTGCAGTCCC
ATCCAATGTGGTGG
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