CB250356

Overview
NameCB250356
Unique NameCB250356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:35..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.573e-16
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  122 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 436
            D   KE   D   LV+FYAPWCGHCKKL P +  +G   K   S V +GK+D   + S+ S++GV+GYPTI+   KG L    Y GPR+ + + E+ +   G  ++
Sbjct:   32 DESFKENRNDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNYRGPRTKDDIIEFAHRVSGALIR 135          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  161 LVEFYAPWCGHCKKLAPEYERLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 436
            LV+FYAPWCGHCKKL P +  +G   K   S V +GK+D   + S+ S++GV+GYPTI+   KG L    Y GPR+ + + E+ +   G  ++
Sbjct:   48 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNYRGPRTKDDIIEFAHRVSGALIR 138          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: GSBP_CHICK (Dolichyl-diphosphooligosaccharide--protein glycotransferase OS=Gallus gallus PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFK-KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEPKKYEGPRSTEALAEYVNNEGG 424
            D+V+V  + NF + +       VEFYAP CGHCK LAP+Y + G   K +   +   KV+  E   L  +YGV+ YPTI++F  G +  PK+Y   R  + +  ++    G
Sbjct:   23 DNVLVAKKSNFLEPLAAHSYLAVEFYAPLCGHCKALAPDYAKAGGKLKAEGSEIKAAKVEATEESDLAQQYGVRAYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTG 133          

HSP 2 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 35/108 (32.41%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  104 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK-KYEGPRSTEALAEYVNNEG 421
            V VL   N+E+    + +   +EFYAPWCGHCK+LAP ++RLG ++K  ++++I K++   ++    K  V  +PT+++FP  +      Y G R+ +   +++ + G
Sbjct:  370 VKVLVGKNYEEVAFDEKKNVFIEFYAPWCGHCKQLAPMWDRLGEAYKDDENIVIAKMESTANEVEAIK--VHSFPTLKFFPASAERTVIDYNGERTLDGYKKFLESGG 475          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA5_HUMAN (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDC--DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 409
            V+ L  DNF + + + +  LV FYAPWC HCKK+ P +     +FK  + +    VDC  D+++ LC +  V+GYPT  ++  G    +KY+  R+      Y+
Sbjct:  399 VLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHYYHYGKF-AEKYDSDRTELGFTNYI 501          

HSP 2 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  113 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASF--KKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP--RSTEALAEYVNN 415
            LT+++F++ V +    LV F+APWCGHCKK+ PE+E+   +   +   S ++  VD   +K+L  ++ +  +PT+++F  G    +KY  P  R+ +   E++ N
Sbjct:  281 LTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNG----EKYAVPVLRTKKKFLEWMQN 381          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: ERP44_BOVIN (Endoplasmic reticulum resident protein ERp44 OS=Bos taurus GN=ERP44 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 36/121 (29.75%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   68 LTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKK----AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 418
            L  +  + +  +++ L  +N +  +     ALV FYA WC   + L P +E      K+    A  V+  +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +
Sbjct:   19 LVTWVFTPVTAEIISLDTENIDDILNNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNANQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: ERP44_HUMAN (Endoplasmic reticulum resident protein ERp44 OS=Homo sapiens GN=ERP44 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = 2
Query:   68 LTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYER----LGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 418
            L  +  + +  ++  L  +N ++ +     ALV FYA WC   + L P +E     +   F     V+  +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +
Sbjct:   19 LVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA5_RAT (Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDC--DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 409
            V+ L  DNF + + + +  LV FYAPWC HCKK+ P +     +FK  + +    VDC  D+++ LC +  V+ YPT  ++  G L  +KYE  R+      ++
Sbjct:  397 VLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQESVKAYPTFHYYHYGKL-VEKYESDRTELGFTSFI 499          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA5_MOUSE (Protein disulfide-isomerase A5 OS=Mus musculus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.535e-14
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDC--DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 409
            V+ L  DNF   + + +  LV FYAPWC HCKK+ P +     +FK+ + +    VDC  D+++ LC +  V+ YPT  ++  G L  +KYE  R+      ++
Sbjct:  397 VLHLVGDNFRDTLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKEDRKIACAAVDCVKDKNQDLCQQEAVKAYPTFHYYHYGKL-VEKYESDRTELGFTSFI 499          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: ERP44_MOUSE (Endoplasmic reticulum resident protein ERp44 OS=Mus musculus GN=Erp44 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  101 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKA----KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 418
            ++  L  +N ++ +     ALV FYA WC   + L P +E      K+       V+  +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +
Sbjct:   30 EIASLDSENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: TXND_THEPA (Thioredoxin domain-containing protein OS=Theileria parva GN=TP02_0602 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGA-----LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE-GPRSTEALAEY 406
            +V+L E NFEK      GA      V+FYAPWC HC+K+AP +E L  + K    V +  VD   + +L  ++ ++GYPT+  F KG +   +YE G R+ E L+E+
Sbjct:   32 LVLLNEKNFEKLTQASTGATTGTWFVKFYAPWCSHCRKMAPAWESLAKALK--GQVNVADVDVTRNLNLGKRFQIRGYPTLLLFHKGKM--YQYEGGERTVEKLSEF 134          
The following BLAST results are available for this feature:
BLAST of CB250356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
TMX3_HUMAN4.573e-1641.51Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
TMX3_MOUSE1.019e-1543.01Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
GSBP_CHICK1.330e-1536.04Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
PDIA5_HUMAN3.277e-1434.62Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]
ERP44_BOVIN4.280e-1429.75Endoplasmic reticulum resident protein ERp44 OS=Bo... [more]
ERP44_HUMAN7.301e-1428.93Endoplasmic reticulum resident protein ERp44 OS=Ho... [more]
PDIA5_RAT9.535e-1434.62Protein disulfide-isomerase A5 OS=Rattus norvegicu... [more]
PDIA5_MOUSE9.535e-1434.62Protein disulfide-isomerase A5 OS=Mus musculus GN=... [more]
ERP44_MOUSE2.124e-1330.91Endoplasmic reticulum resident protein ERp44 OS=Mu... [more]
TXND_THEPA2.774e-1339.25Thioredoxin domain-containing protein OS=Theileria... [more]

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Properties
Property NameValue
Genbank descriptionEST0150 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ219 similar to protein disulfide isomerase (acc# NP_182269), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250356 ID=CB250356; Name=CB250356; organism=Citrus sinensis; type=EST; length=464bp
CACGGGGGGAAAAAAAAAAAGAAAGAGAGAAATGGAGAGGTATCAGATCT
GGCTAGCTCTAGGCACTTTAACCTTGTTCTTCGTATCAGCTCTAGCGGAC
GATGTCGTTGTGCTAACAGAAGACAACTTCGAGAAGGAGGTTGGTCAGGA
CAGGGGAGCTCTTGTTGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAAA
AGCTTGCTCCAGAGTATGAGAGACTTGGTGCAAGCTTTAAGAAAGCAAAG
TCTGTCTTGATTGGAAAGGTGGACTGTGACGAGCATAAGAGCTTATGCAG
CAAATATGGTGTTCAAGGATACCCAACAATTCAATGGTTTCCTAAAGGTT
CTTTGGAACCCAAAAAGTATGAAGGGCCACGATCTACTGAAGCCCTTGCT
GAGTATGTGAATAATGAAGGAGGAACCAATGTGAAGATAGCTGCAGTCCC
ATCCAATGTGGTGG
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