CB250356

Overview
NameCB250356
Unique NameCB250356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:35..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: BS2_TRYBB (Bloodstream-specific protein 2 OS=Trypanosoma brucei brucei GN=BS2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  113 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAA 445
            LT++NF + + +    LV+FY   CG+C+ LAPE+E+  A+ +   + L+G+VDC     L + + ++GYPTI  F  G  E + Y G R+ + + +Y+    G  V  A+
Sbjct:   24 LTKENFNETIAKSEIFLVKFYVDTCGYCQMLAPEWEK--AANETIDNALMGEVDCHSQPELAANFSIRGYPTIILFRNGK-EAEHYGGARTKDDIIKYIKANVGPAVTPAS 131          

HSP 2 Score: 71.2478 bits (173), Expect = 2.349e-12
Identity = 36/121 (29.75%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNV 460
            D    +     +K +   +  L+ F+APWCGHCK  AP ++++   F  A  +++ ++D   +    S + V  +PT+ + P G  +P  +EG RS E + E+V     T  K++  P+NV
Sbjct:  349 DGKTTIVAKTMQKHLTSGKDMLILFFAPWCGHCKNFAPTFDKIAKEF-DATDLIVAELDATANYVNSSTFTVTAFPTVFFVPNGG-KPVVFEGERSFENVYEFVRKH-VTTFKVSEKPANV 466          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: PDIA5_BOVIN (Protein disulfide-isomerase A5 OS=Bos taurus GN=PDIA5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.798e-12
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDC--DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 379
            V+ L+ DNF + + + + ALV FYAPWC HCKK  P +     +FK  + +    +DC  + +K LC +  V+ YPT  ++  G    K    P
Sbjct:  401 VLHLSGDNFRETLKRKKHALVMFYAPWCPHCKKAIPHFTAAADAFKDDRKIACAAIDCVKENNKDLCQQEAVKAYPTFHYYHYGKFVEKYDTNP 494          

HSP 2 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 33/105 (31.43%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  113 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASF--KKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP--RSTEALAEYVNN 415
            L++++F++ V +    LV F+APWCGHCKK+ PE+E        +   S ++  VD   +K+L  ++ +  +PT+++F  G    +KY  P  R+ ++  E++ N
Sbjct:  283 LSDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGEGDSSGVLAAVDATVNKALAERFHIAEFPTLKYFKNG----EKYAVPALRTKKSFIEWMRN 383          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: MPD1_YEAST (Protein disulfide-isomerase MPD1 OS=Saccharomyces cerevisiae GN=MPD1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 2
Query:  113 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 367
            LT  +F+K +   +  +LVEFYAPWCGHCKKL+  + +          V     D +++K+LC+KY V G+PT+  F    ++  K
Sbjct:   34 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSK 119          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: DJC10_PONAB (DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  113 LTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE---GPRSTEALAEYVNNE 418
            LT   F ++V Q +   +++FYAPWCG C+  APE+E L    K    V  GKVDC  +   C K G++ YPT++++   S +    E     R  +A+A  +N +
Sbjct:  675 LTPQTFSEKVLQGKNHWVIDFYAPWCGPCQNFAPEFELLARMIK--GKVKAGKVDCQAYAQTCQKAGIRAYPTVKFYFYESAKRTFQEEQINIRDAKAIAALINEK 778          

HSP 2 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 2
Query:  161 LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 415
            LV+F+APWC  C+ L PE  R  AS      +  G +DC  H+ LC+ Y +Q YPT   F + ++   +YEG  S E + E++ +
Sbjct:  472 LVDFFAPWCPPCRALLPELRR--ASNLLYGQLKFGTLDCTVHEGLCNMYNIQAYPTTVVFNQSNIH--EYEGHHSAEQILEFIED 552          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: DJC10_HUMAN (DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.988e-11
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 2
Query:  113 LTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 340
            LT   F ++V Q +   +++FYAPWCG C+  APE+E L    K    V  GKVDC  +   C K G++ YPT++++
Sbjct:  675 LTPQTFSEKVLQGKNHWVIDFYAPWCGPCQNFAPEFELLARMIK--GKVKAGKVDCQAYAQTCQKAGIRAYPTVKFY 749          

HSP 2 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 2
Query:  161 LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 415
            LV+F+APWC  C+ L PE  R  AS      +  G +DC  H+ LC+ Y +Q YPT   F + ++   +YEG  S E + E++ +
Sbjct:  472 LVDFFAPWCPPCRALLPELRR--ASNLLYGQLKFGTLDCTVHEGLCNMYNIQAYPTTVVFNQSNIH--EYEGHHSAEQILEFIED 552          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: EUG1_YEAST (Protein disulfide-isomerase EUG1 OS=Saccharomyces cerevisiae GN=EUG1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.597e-11
Identity = 34/104 (32.69%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  101 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL-EPKKYEGPRSTEALAEYV 409
            D++VLTE  F+  +      LVEF+APWC H + L P  E   AS  K  +V + ++DC+ +  +C +  +  YPT++ F  G + + + Y G + T+ + +Y+
Sbjct:   34 DLLVLTEKKFKSFIESHPLVLVEFFAPWCLHSQILRPHLEE-AASILKEHNVPVVQIDCEANSMVCLQQTINTYPTLKIFKNGRIFDGQVYRGVKITDEITQYM 136          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: DJC10_XENLA (DnaJ homolog subfamily C member 10 OS=Xenopus laevis GN=dnajc10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 343
            VV LT + F+  V   RG    +V+FYAPWCG C+ L PE++R+        SV  G +DC ++   C++  V GYP I+ +P
Sbjct:  559 VVTLTPETFQSLVRNRRGDEMWMVDFYAPWCGPCQALMPEWKRMARHINGLISV--GSIDCQKYSLFCTQERVNGYPEIRLYP 639          

HSP 2 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  113 LTEDNFEKEV--GQDRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG 376
            LT ++F + V  G+D   L +FYAPWCG C+   PE+E L  + K    +  GKV+C  ++ LC+   ++ YPT++ +P    + K Y G
Sbjct:  676 LTPESFHEHVINGKDNWVL-DFYAPWCGPCQNFNPEFEILARAVK--GKIKAGKVNCQAYEHLCNSASIRSYPTVRLYPYNGSKKKDYFG 762          

HSP 3 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 2
Query:   98 DDVVVLTEDNFEKEVGQDRGAL--VEFYAPWCGHCKKLAPEYERLGASFKKAKSVL-IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 406
            DD+ ++T D  E +   + G L  + FY+P C HC  LAP + +     K+   +L IG V+C +++ LC   G+  YP +  F K  + P KY G RS E L  +
Sbjct:  128 DDLEIITLDRGEFDGAVNSGELWFINFYSPGCSHCHDLAPTWRQFA---KEMDGLLRIGAVNCGDNRMLCRSQGINSYPNLYIF-KSGMNPVKYYGERSKERLVNF 229          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: DJC10_MOUSE (DnaJ homolog subfamily C member 10 OS=Mus musculus GN=Dnajc10 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  161 LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPS 454
            LV+F+APWC  C+ L PE  +  AS      + +G +DC  H+ LC+ Y +Q YPT   F + S+   +YEG  S E + E++ +    +V ++  PS
Sbjct:  472 LVDFFAPWCPPCRALLPELRK--ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIH--EYEGHHSAEQILEFIEDLRNPSV-VSLTPS 564          

HSP 2 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  104 VVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKY 370
            VV LT   F + V Q   D   +V+FY+PWC  C+ L PE++R+  +      + +G VDC ++ S C++  VQ YP I+++P+ S +  +Y
Sbjct:  558 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWCHPCQVLMPEWKRMARTLTGL--INVGSVDCQQYHSFCTQENVQRYPEIRFYPQKSSKAYQY 647          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: DJC10_RAT (DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.785e-11
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  161 LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNN 415
            LV+F+APWC  C+ L PE  +  AS      + +G +DC  H+ LC+ Y +Q YPT   F + S+   +YEG  S E + E++ +
Sbjct:  472 LVDFFAPWCPPCRALLPELRK--ASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSVH--EYEGHHSAEQILEFIED 552          
BLAST of CB250356 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 34/108 (31.48%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   92 LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKKLAPEYERLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 412
            ++D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  + +   ++    + + K++ D++     KYG++G PT+  F  G +   K  G  S   L E+++
Sbjct:    1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV-GALSKGQLKEFLD 105          
The following BLAST results are available for this feature:
BLAST of CB250356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
BS2_TRYBB2.774e-1334.23Bloodstream-specific protein 2 OS=Trypanosoma bruc... [more]
PDIA5_BOVIN1.798e-1235.11Protein disulfide-isomerase A5 OS=Bos taurus GN=PD... [more]
MPD1_YEAST1.522e-1137.21Protein disulfide-isomerase MPD1 OS=Saccharomyces ... [more]
DJC10_PONAB1.522e-1134.91DnaJ homolog subfamily C member 10 OS=Pongo abelii... [more]
DJC10_HUMAN1.988e-1140.26DnaJ homolog subfamily C member 10 OS=Homo sapiens... [more]
EUG1_YEAST2.597e-1132.69Protein disulfide-isomerase EUG1 OS=Saccharomyces ... [more]
DJC10_XENLA3.391e-1139.76DnaJ homolog subfamily C member 10 OS=Xenopus laev... [more]
DJC10_MOUSE3.391e-1135.71DnaJ homolog subfamily C member 10 OS=Mus musculus... [more]
DJC10_RAT5.785e-1137.65DnaJ homolog subfamily C member 10 OS=Rattus norve... [more]
THIO_SHIFL7.555e-1131.48Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0150 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ219 similar to protein disulfide isomerase (acc# NP_182269), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250356 ID=CB250356; Name=CB250356; organism=Citrus sinensis; type=EST; length=464bp
CACGGGGGGAAAAAAAAAAAGAAAGAGAGAAATGGAGAGGTATCAGATCT
GGCTAGCTCTAGGCACTTTAACCTTGTTCTTCGTATCAGCTCTAGCGGAC
GATGTCGTTGTGCTAACAGAAGACAACTTCGAGAAGGAGGTTGGTCAGGA
CAGGGGAGCTCTTGTTGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAAA
AGCTTGCTCCAGAGTATGAGAGACTTGGTGCAAGCTTTAAGAAAGCAAAG
TCTGTCTTGATTGGAAAGGTGGACTGTGACGAGCATAAGAGCTTATGCAG
CAAATATGGTGTTCAAGGATACCCAACAATTCAATGGTTTCCTAAAGGTT
CTTTGGAACCCAAAAAGTATGAAGGGCCACGATCTACTGAAGCCCTTGCT
GAGTATGTGAATAATGAAGGAGGAACCAATGTGAAGATAGCTGCAGTCCC
ATCCAATGTGGTGG
back to top