CB250361

Overview
NameCB250361
Unique NameCB250361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig121 contig Csv1_Contig121:1..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI4_ARATH (Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  218 AAVDANSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 403
            A+  + +  L+GVVF+PF+EVKKE+   P S  LSLARQKY DECEAAINEQINVEYNVSYV
Sbjct:   53 ASKSSTTDALSGVVFEPFKEVKKELDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVSYV 114          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI2_ARATH (Ferritin-2, chloroplastic OS=Arabidopsis thaliana GN=FER2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  185 SPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 403
            SP   R   V AA   N+  LTGVVF+PFEEVKKE+   P +P +SLAR K+ D+ E+AIN+QINVEYNVSYV
Sbjct:   35 SPSGSR-FSVQAAKGTNTKSLTGVVFEPFEEVKKEMELVPTTPFVSLARHKFSDDSESAINDQINVEYNVSYV 106          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.692e-16
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  152 STASLVKLGCISPRT--KRSLKVSAAVDA-NSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 403
            S+ SL       PR+   R L V AA  + N   LTGV+F+PFEEVKKE+   P  P  SLARQKY DE E+A+NEQINVEYNVSYV
Sbjct:   11 SSLSLFSPNAEPPRSVPARGLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYV 97          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.998e-16
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  215 SAAVDANSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 403
            +A    N   LTGV+F+PFEEVKKE+   P  P  SLARQKY DE EAA+NEQINVEYNVSYV
Sbjct:   38 AAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESEAAVNEQINVEYNVSYV 100          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI2_MAIZE (Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  191 RTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSY 400
            R+  SL  +AA       L+GVVFQPFEE+K E+   P SP  SLAR K+ D+CEAAINEQINVEYN SY
Sbjct:   34 RSGVSLSAAAAAGKGKEVLSGVVFQPFEEIKGELALVPQSPDRSLARHKFVDDCEAAINEQINVEYNASY 103          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI3_ARATH (Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  131 SSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 403
            SSS    S  S  K G +S      L+ S +    +  L+GVVF+PFEEVKKE+   P    LSLAR  Y  ECEAA+NEQINVEYNVSYV
Sbjct:   26 SSSSSISSPVSSGKSGNLS----FPLRASKSSTTTTSTLSGVVFEPFEEVKKEMDLVPSGQQLSLARHLYSPECEAAVNEQINVEYNVSYV 112          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI2_SOYBN (Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.632e-15
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 2
Query:  200 RSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 403
            RS +V AA +A + PL GV+F+PF+E+KK+ L  P++  + LARQ Y D+ E+AINEQINVEYNVSYV
Sbjct:   42 RSSRVCAASNAPA-PLAGVIFEPFQELKKDYLAVPIAHNVXLARQNYADDSESAINEQINVEYNVSYV 108          
BLAST of CB250361 vs. ExPASy Swiss-Prot
Match: FRI1_MAIZE (Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.576e-14
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  245 LTGVVFQPFEEVKKEVLDAPVSPLLSLARQKYEDECEAAINEQINVEYNVSY 400
            L+GVVFQPFEE+K E+   P SP  SLAR K+ D+CEAA+NEQINVEYN SY
Sbjct:   55 LSGVVFQPFEEIKGELALVPQSPDKSLARHKFVDDCEAALNEQINVEYNASY 106          
The following BLAST results are available for this feature:
BLAST of CB250361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FRI4_ARATH1.578e-1669.35Ferritin-4, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI2_ARATH1.578e-1660.27Ferritin-2, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI4_SOYBN2.692e-1657.47Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI2_VIGUN5.998e-1666.67Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI2_MAIZE2.279e-1560.00Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1... [more]
FRI3_ARATH5.078e-1552.75Ferritin-3, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI2_SOYBN6.632e-1558.82Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI1_MAIZE9.576e-1469.23Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionEST0155 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ224 similar to ferritin 2 (acc# AAN06322), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250361 ID=CB250361; Name=CB250361; organism=Citrus sinensis; type=EST; length=403bp
GCCATTCTTCTTCATCAAATTCATTTGCTTTCTTCCTTCAATCTCCATTA
CGCACTTGCTTACATCAATGGCATTGGCAGCTTCTTCTTCCTCCTCTCTT
GCAGCGAAGCAACTGGCTGGTCTTATAACAAGCTCATCATGTTACACTAA
GTCTACTGCTTCTCTTGTGAAATTGGGTTGTATTTCGCCGAGAACGAAGA
GGAGTCTGAAGGTTTCTGCTGCTGTGGACGCCAATAGCATGCCGCTGACC
GGGGTCGTGTTTCAGCCATTCGAAGAGGTCAAGAAAGAGGTTCTTGATGC
TCCTGTTTCCCCTCTGCTTTCACTAGCTCGCCAAAAGTATGAGGACGAGT
GTGAGGCCGCTATCAACGAGCAGATCAATGTGGAATATAATGTCTCATAC
GTG
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