CB250370

Overview
NameCB250370
Unique NameCB250370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:294..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.284e-43
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G
Sbjct:   92 TALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTG 208          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.308e-43
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            T LF  G  CG+CYE+KC + P  C  G+  ++VTATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFNLV+++NVGGAGD
Sbjct:   82 TPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGD 198          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.545e-43
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN+G SCG CY + C++  D +WCL G S+++TATNFCPPN AL N+NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG  YF LV I NVGGAG
Sbjct:   66 TALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAG 182          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.247e-42
Identity = 73/117 (62.39%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN+GL+CG CY++ C+   D  WC PG S+ +TATNFCPPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG
Sbjct:   74 TALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAG 190          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.126e-42
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNV  AG
Sbjct:   79 TALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAG 195          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.777e-42
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G
Sbjct:   74 TALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTG 190          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.627e-42
Identity = 74/118 (62.71%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            TALFN+G SCG CY++ C+    P+WCL G SI +TATNFCPPN A ++DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG +YF LVLI+NV G G+
Sbjct:   68 TALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGE 185          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.737e-42
Identity = 70/114 (61.40%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALFNNG  CG+CYE+ CE+ P+WCLPGSI +TATNFCPP+    NDN  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG
Sbjct:  130 TALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAG 241          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.378e-41
Identity = 73/121 (60.33%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    7 LFNNGLSCGSCYEMKCEN----DPKWCLPG----SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGD 345
            +F +GLSCG+C+E++C      D + CLP     SI+VTAT+ CP N AL  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NGHSYFNLVL++NVGGAGD
Sbjct:   72 MFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGD 192          
BLAST of CB250370 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 TALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAG 342
            TALF++G SCG CY + C+   DP+WC  G S+ VTATNFCPPN AL +D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G  YF LVL+TNV  AG
Sbjct:   74 TALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAG 190          
The following BLAST results are available for this feature:
BLAST of CB250370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP22_ORYSJ4.284e-4362.39Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ7.308e-4364.10Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH9.545e-4364.10Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP13_ORYSJ1.247e-4262.39Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ2.126e-4261.54Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.777e-4261.54Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH3.627e-4262.71Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP24_ARATH4.737e-4261.40Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP21_ORYSJ1.378e-4160.33Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ3.070e-4162.39Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionEST0168 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ243 similar to expansin (acc# AAC33530), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250370 ID=CB250370; Name=CB250370; organism=Citrus sinensis; type=EST; length=346bp
ACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAA
ATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCG
CCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGT
TGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTT
GCAAATTGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGA
TCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCA
TACTTCAACCTGGTTTTGATCACAAATGTCGGAGGAGCAGGAGATG
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